Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00126 ATGTTGGATCTTAATCTCAATGTCATCTCGAACGATCCGAATCAGAACGATGAATCTATTTTGTTGATCGAGAAGCTTCCTCAGGGTTCGGTGAACCAAATGGACGAATCGGAGACATCAAATTCCTCGATTGTCAATGCGGATGCCTCGAGCAATGGATGTGACGAAGACTCGTGCTCTACACGCGCCGATGATGTGGTGGTGACATTGAACTTCGAAATTTTGAAGGCTGGGAGGGGGAACGATGTCGTCACGAAGGAGTTCTTTCCTGTAACTGGAGCTTCTACTGGAGTCAAAAGAGATTTTGGGAATTGGCAGGGGCAGAACTCGGCTTCTCCTTCCTCGTCTTCCAGGAAGAACTGGATCGACTTATCGTTTGATCAGGGAGGCTCAGGAGCTGACTTGAGAGTGGTTCAGCCACAACTACAACAACCGGTGAAAAAGAGCAGGAGGGGACCGAGGTCTCGAAGCTCGCAGTACAGAGGTGTAACGTTCTACCGGAGGACTGGACGATGGGAATCCCATATTTGGTATGTCAACTTGATTAAATTTTTGATTTCACTGGTTTATATAGCTTATGATCGAGCTGCAATAAAGTTCAGAGGAGTTGATGCAGACATCAATTTTAATCTCAGTGATTATGACGAAGAATTAAAACAGATGAAGAATCTTACCAAGGAAGAATTTGTTCACATACTCCGACGCCAGAGCACAGGCTTTTCAAGGGGGAGCTCGAAATATCGAGGTGTAACACTGCACAAATGTGGTCGATGGGAAGCTAGAATGGGACAGTTCCTTGGAAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCCTATGACAAGGCGGCTATCAAATGTAATGGAAGGGAGGCTGTCACGAATTTTGAACCTAGCACATATGAGGGGGAGATGATGTCAGAGGGTAGTAACGAAGGCTGCGAAAAATTTCTTGATCTAAACTTGGGAATTTCACCTCCTTCACTCGATAACGGTCCCAAGGAAAATGAAGGCCTTCAGTTCAACACTGTTCCCTTTTATGTACGCAATGGAAGGTCTTCAAAGCAGATGGAAAGTCATGCTAATGGAAGGGTTGGTGATCCACCTATGGCCATGAAAGGGCTAGTATTGACACCGGAAAACATGCCCTTTTGGAACAGTGTGCATCCGACTTACTTTCCCAATGAGGAAAGATTATCAGAGAGGAGACTTCCATTAAGTTCATCGCGAGGACTTCCCAACTGGGCATGGCAAATTCATGGTCCAGTCGGTGCTACCCAAATGTCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCGGCTACCCCTTCCCTTGCTGCCATACCTCAATCAAATCCACCCACCTCCGCTCCACACAATCTCTGTTTTGCTTCATCCTCATCTGCCTTCAACTCCTCGCCATATCATTTGCAAGTGAAGCCCCCACAAGCACCGCCATAA 1485 46.13 MLDLNLNVISNDPNQNDESILLIEKLPQGSVNQMDESETSNSSIVNADASSNGCDEDSCSTRADDVVVTLNFEILKAGRGNDVVTKEFFPVTGASTGVKRDFGNWQGQNSASPSSSSRKNWIDLSFDQGGSGADLRVVQPQLQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWYVNLIKFLISLVYIAYDRAAIKFRGVDADINFNLSDYDEELKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMMSEGSNEGCEKFLDLNLGISPPSLDNGPKENEGLQFNTVPFYVRNGRSSKQMESHANGRVGDPPMAMKGLVLTPENMPFWNSVHPTYFPNEERLSERRLPLSSSRGLPNWAWQIHGPVGATQMSLFSTAASSGFSFSATPSLAAIPQSNPPTSAPHNLCFASSSSAFNSSPYHLQVKPPQAPP 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1983908 1987058 - Bma024899.2 Bma07g00126 85263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00126 494 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Bma07g00126 494 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Bma07g00126 494 SUPERFAMILY DNA-binding domain 158 211 IPR016177 GO:0003677
Bma07g00126 494 SMART rav1_2 159 216 IPR001471 GO:0003700|GO:0006355
Bma07g00126 494 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Bma07g00126 494 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Bma07g00126 494 SUPERFAMILY DNA-binding domain 245 304 IPR016177 GO:0003677
Bma07g00126 494 MobiDBLite consensus disorder prediction 31 57 - -
Bma07g00126 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 464 - -
Bma07g00126 494 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 464 - -
Bma07g00126 494 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
Bma07g00126 494 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Bma07g00126 494 MobiDBLite consensus disorder prediction 31 58 - -
Bma07g00126 494 Pfam AP2 domain 245 295 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00126 Bma-Chr7:1983908 Bma07g00696 Bma-Chr7:14932798 5.19E-06 dispersed
Bma03g01107 Bma-Chr3:14349161 Bma07g00126 Bma-Chr7:1983908 6.79E-94 transposed
Bma06g00380 Bma-Chr6:10500226 Bma07g00126 Bma-Chr7:1983908 9.11E-91 transposed
Bma09g00268 Bma-Chr9:14727677 Bma07g00126 Bma-Chr7:1983908 2.14E-52 transposed
Bma03g00323 Bma-Chr3:2429169 Bma07g00126 Bma-Chr7:1983908 4.12E-12 wgd
Bma07g00126 Bma-Chr7:1983908 Bma08g00963 Bma-Chr8:48627500 7.59E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57570 PF00847 AP2 2.90E-09 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00126 K09284 - csv:101222024 580.867