Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00137 ATGGAAATTGATCTGAACCATGCAGTGATTGAGGCGGAGAATAATGCATTTTGCAATGGGACTTGCGAAGAGGGGGCAAACAAAGATAATGATGAGGTCTATACGCAAGTTACTCTGCTCCCTCAACCAGAGTTGGTTGGTGAGACTTTAGCTGGAAAAGAGCTTGAAGAGCTGGGCATGGGAGATGGGAGTGGAGGGCCACCCATAAGAACTACCCCTCATATGTTCTGTAAGACTCTTACAGCTTCTGATACCAGCACTCATGGAGGTTTCTCTGTTCCTCGTCGGGCTGCCGAAGACTGTTTCCCTCCTCTGGATTACAAACAGCCGAAACCGTCTCAAGAACTTGTTACGAAAGATCTGCATGGAGTGGAGTGGAAGTTTCGACATATTTACAGAGGCAAGTCTTCTCCGAGGCGACACTTGCTCACTACGGGGTGGAGTACTTTTGTGAGCCAAAAGAATCTTGTTTTTGGAGATGCAGTTCTCTTCTTAAGAGGGGAAAATGGAGAGCTAAGGTTGGGAATCAGAAGAGCTGTCCGGCCTCGTAGTGGTCTTCCCGACTCAATTTTTGGCAATCAAAATGCCTATCCCAATGTCATTTCTTCATTGGCTAAAGCGATATCCACCAAGAGCGCGTTTCATGTATTCTACAGTCCAAGGTGGTGTAGTGGCGTCGTGAGTAATATTGCTGATGTCGATCCTTTTCGATGGCCAAACTCGAAATGGAGATGCTTGATGGTCAGATGGGATGAAGATATCACAAGTGGTCACCGGGAGCGTGTTTCGCCCTGGGAGATCGATACTTCTGTTTCTCTCCCGCCTTTGAGCGTGCAGACTTTGCCAAGGATGAAGAAACTGCGGACAAGTCTGCCAGCCACCCCGCCGACCAACCCCATACCTGGAGGTGGTATTTTGGACTTTGAGGATTCTTTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTGAGTTTTACATCATCTCCCTTCAATCGATGTAATACTGCAAATCGTTCACTCGAGTTTGAGAGACAATCCCAAGTGATTCAAATGAAAAATCCGGGTGAAATGGGAAATTGTAATATTGCTGACTTTGTCAAGGCTCATTCTATTCCTTACATGGGCTTTAAGGATAACTGCGGATATCCGAGGGTGTTGACAGGTCAAGAAATGTTTCCATCGAAGATGCTAACGAAGAAAGCAGAATTCATGGGTCAGCTCAACATTAGTAACAGTTCTTCGAACATGTTTCAATCACGCAAACTTTTATCGGAAGGCACTCAAAACATGTATATTCCTCATCGTGAAATTTACAAGCGCAGCCAAGATTCCGCCAGGCTCTCTTATATTAACAATTTCTCTCAAGAAGTCTCGTTTAATTCTTCTATGGAGGCTGCAAGTAACCGAAATGATGCTCAAAGGACAGTTTTACCGAATTTGCAAGAGCAAATGGAAGTTCTAAGAAAATCCAACGATGACAATTCTAATGCTATTACAACTGGTTGTAGACTTTTCGGGGTTTCCTTGACTGGGGAAACAGCTACGAATTCACAGAGTTCTGGGAAGAGAAGTTGCACGAAGGTTCACAAGCAAGGTAGCTTGGTGGGAAGAGCGATCGATCTCGCCAAACTGAATGGCTATGCCGACCTGCTCACTGAACTTGAGCGTTTGTTCGGAATGGAAGGCCTCTTAAGAGATCCCGACAAAGGGTGGAGGATATTATACACTGACAGCGAAAACGATGTGATGGTTGTCGGAGACGATCCATGGCATGAGTTCTGCAATGAAGTGGCCAAGATCCATATCTACACTCAGGAAGAAGTGGAGAAGATGACAGTGGGAATGCTAAGTGATGATACTCAAAGCTCCTTAGAACAGGCTCCACCCAACACGGAACCGTCCAAATCCTCGTCGGTTGGACAGCCGGATTCGTCCCCGACGACCGAGAGGGCGTAA 1959 45.99 MEIDLNHAVIEAENNAFCNGTCEEGANKDNDEVYTQVTLLPQPELVGETLAGKELEELGMGDGSGGPPIRTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQPKPSQELVTKDLHGVEWKFRHIYRGKSSPRRHLLTTGWSTFVSQKNLVFGDAVLFLRGENGELRLGIRRAVRPRSGLPDSIFGNQNAYPNVISSLAKAISTKSAFHVFYSPRWCSGVVSNIADVDPFRWPNSKWRCLMVRWDEDITSGHRERVSPWEIDTSVSLPPLSVQTLPRMKKLRTSLPATPPTNPIPGGGILDFEDSFRSSKVLQGQENVSFTSSPFNRCNTANRSLEFERQSQVIQMKNPGEMGNCNIADFVKAHSIPYMGFKDNCGYPRVLTGQEMFPSKMLTKKAEFMGQLNISNSSSNMFQSRKLLSEGTQNMYIPHREIYKRSQDSARLSYINNFSQEVSFNSSMEAASNRNDAQRTVLPNLQEQMEVLRKSNDDNSNAITTGCRLFGVSLTGETATNSQSSGKRSCTKVHKQGSLVGRAIDLAKLNGYADLLTELERLFGMEGLLRDPDKGWRILYTDSENDVMVVGDDPWHEFCNEVAKIHIYTQEEVEKMTVGMLSDDTQSSLEQAPPNTEPSKSSSVGQPDSSPTTERA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2055171 2059202 - Bma024910.1 Bma07g00137 85274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00137 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 221 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma07g00137 652 ProSiteProfiles PB1 domain profile. 524 606 IPR000270 GO:0005515
Bma07g00137 652 SUPERFAMILY CAD & PB1 domains 525 603 - -
Bma07g00137 652 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 221 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma07g00137 652 MobiDBLite consensus disorder prediction 616 652 - -
Bma07g00137 652 CDD B3_DNA 74 178 IPR003340 GO:0003677
Bma07g00137 652 Gene3D - 74 180 IPR015300 -
Bma07g00137 652 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677
Bma07g00137 652 SMART B3_2 76 180 IPR003340 GO:0003677
Bma07g00137 652 PANTHER AUXIN RESPONSE FACTOR 221 640 - -
Bma07g00137 652 SUPERFAMILY DNA-binding pseudobarrel domain 71 185 IPR015300 -
Bma07g00137 652 PANTHER AUXIN RESPONSE FACTOR 26 221 - -
Bma07g00137 652 Gene3D - 520 613 - -
Bma07g00137 652 Pfam AUX/IAA family 514 608 IPR033389 -
Bma07g00137 652 Gene3D - 212 274 - -
Bma07g00137 652 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00137 Bma-Chr7:2055171 Bma07g00402 Bma-Chr7:4917151 1.40E-92 dispersed
Bma07g00137 Bma-Chr7:2055171 Bma11g00426 Bma-Chr11:4591491 1.22E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57572 PF02362 B3 3.50E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00137 - - qsu:112032972 820.846