Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00147 ATGGCGAAAGACGTCGAAGTTGCAGAGCAGGGAGATTACTTTTACAGAGCTCTGATCGCAGAGTTCATCGCAACGCTTCTGTTCCTCTACATCACCATATTGACTGTGATCGGATATAGCAACGCCACTGCCTCGCCTAATAGCCCTTGCGATGGAGTTGGTATTCTGGGTATCGCCTGGGCCTTTGGAGGAATGATCTTCGTCCTCGTCTACTGTACCGCCGGTATCTCTGGAGGACATATAAACCCGGCGGTGACGTTAGGGCTGTTCTTGGCGAGGAAGGTGTCACTGGTGAGGGCGATTATGTATATGGTGGCTCAGTGTTTGGGCGCCATCTGTGGATGCGGGCTGGTGAAGGCCTTCCAAAAGTCATACTACAGTCGGTACGGAGGTGGGGCAAACGAGCTAAAGGATGGATACAACGTCGGCACCGGATTAGGAGCGGAGATCATCGGCACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACTGATCCTAAGCGAAGTGCTCGAGACTCCCATGTTCCGGTTTTGGCCCCTTTGCCAATTGGGTTTGCTGTTTTCATGGTTCACTTGGCGACCATTCCGGTGACCGGAACTGGTATCAACCCTGCTAGAAGTCTCGGAGCTGCGGTCATCTACAACAAGCAGAAGGCCTGGGATGATCAATGGATTTTCTGGGTCGGGCCTTTCATCGGAGCTGCGATTGCTGCTTTCTACCACCAGTATATTCTCAGAGCGGCAGCCATCAAAGCTCTCGGATCTTTCCGGAGCAACGCATAA 783 52.87 MAKDVEVAEQGDYFYRALIAEFIATLLFLYITILTVIGYSNATASPNSPCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKVSLVRAIMYMVAQCLGAICGCGLVKAFQKSYYSRYGGGANELKDGYNVGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKQKAWDDQWIFWVGPFIGAAIAAFYHQYILRAAAIKALGSFRSNA 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2120793 2121902 - Bma024919.1 Bma07g00147 85284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00147 260 TIGRFAM MIP: MIP family channel proteins 20 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 9 260 - -
Bma07g00147 260 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 260 IPR034294 -
Bma07g00147 260 Gene3D Glycerol uptake facilitator protein. 8 260 IPR023271 -
Bma07g00147 260 SUPERFAMILY Aquaporin-like 14 246 IPR023271 -
Bma07g00147 260 CDD MIP 16 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PRINTS Major intrinsic protein family signature 16 35 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 Pfam Major intrinsic protein 14 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00147 260 ProSitePatterns MIP family signature. 80 88 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00147 Bma-Chr7:2120793 Bma12g00064 Bma-Chr12:1219290 1.65E-122 dispersed
Bma01g01921 Bma-Chr1:70932899 Bma07g00147 Bma-Chr7:2120793 2.44E-127 wgd
Bma07g00147 Bma-Chr7:2120793 Bma08g01152 Bma-Chr8:50551770 3.67E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00147 K09872 - pvy:116105008 459.144