Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00168 ATGCTCTCACTGTGTCAATGCCATTGTCTAGCCCACGTCTCTCTCTTTCGCCATACCTCCCATTTCAGGAGAGCTATCTCTCTGTCTCTGATCGAAACCAGCTCCGTTTCTCTTAAGCCCTCCTTCTCTTTACGCTGTAAAAACGCCATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCCGCAGCCAAGAAAAAACCCCAACCTTCTTCTCCCAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTCCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGACAGTCGAGTTCTCGTCAGTTGTAATGGTCCTAGTTCAGGGGTTTACGCAGATACCCATAGTTCGTTAGATGTTGACCAAGTTGTGGAAAGTGGTTGTGATTTCGGAACCAAGAATGCACCGGTTGCGAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATTAGTAAATTGAAGAGTCGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCCGAAATCGGTCGCTTGTTGGAAAAATGGAGAACGCGTGCCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACAGATATAGTGTGCAATATGTTGAGGACTGTAATGCACTCCACGCCTGATGATTTGGTTGCCATCGTTTACCTTTCGGCCAACAAAATAGCTCCCTCGCATGAGGGGTTGGAGCTTGGAATAGGTGATGCCTCGATTATCAAAGCACTCGCAGAAGCTTTTGGGAGGACTGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCCATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTCGTAGCTGCCACTGACTGTGAACCCCTATATTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGGCAAGCTGCCGTATATGCTGAAAAACATTCTAAACCACCATCGCACATCCAATCTCCTTTAGAAGAGGCTACCAAGATTGTTAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCCGAGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAAACGTGTAGCTTTACACCAGGTGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAGGGTGTATCTGAGATCACAAATAAATTCCAGGACACGGAATTTACCTGTGAGTACAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATACAGCAGAAATGCAGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAAACACCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAAAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAATGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGTAGAGAGCACCTTTATAATTCGTTTTGTGAAGAAACTGGATACTTTCAGTTTGCGACAGCAATAACGACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACACTGCTGTTGATGAAAGTTGTGAGGGGTTAATTATCAAAACGTTAGATAGAGATGCAACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTATATTGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGAAAGCGAACAGGGGTTTATGGCGCATTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTGGATGAACGTTCTGCTAGTCTACGTTATAGAGTGATTACTGAACCGAAGTCTTACTATCGGTATGGGGACACGATCAATCCTGATGTGTGGTTTGAACCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATCGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGCAAGACAAGAATCCAGAACAAGCCTCGTCATCTGAGCAAGTGGCTGAGATGTATAATGCTCAAAAACACAATCAACATAACAACCAAGAAGACAATGAAGATGATTGA 2409 42.88 MLSLCQCHCLAHVSLFRHTSHFRRAISLSLIETSSVSLKPSFSLRCKNAMSSRPSAFDALMSGARAAAKKKPQPSSPKKRKTLDSSIPPLKPSPTKALDLPPAIEQQSDSRVLVSCNGPSSGVYADTHSSLDVDQVVESGCDFGTKNAPVAKKMCASSIEERISKLKSRISELKKKAKDFDPKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNMLRTVMHSTPDDLVAIVYLSANKIAPSHEGLELGIGDASIIKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALNVVKVFEESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPSHIQSPLEEATKIVKQVYSVLPVYDKIIPELLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEITNKFQDTEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKTPVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFCEETGYFQFATAITTNDLEEIQKFLDTAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRYRVITEPKSYYRYGDTINPDVWFEPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVRQDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2261324 2267288 - Bma024941.1 Bma07g00168 85305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00168 802 MobiDBLite consensus disorder prediction 770 792 - -
Bma07g00168 802 MobiDBLite consensus disorder prediction 767 802 - -
Bma07g00168 802 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 422 640 - -
Bma07g00168 802 Gene3D - 639 801 IPR012340 -
Bma07g00168 802 Gene3D - 440 638 - -
Bma07g00168 802 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 454 462 IPR016059 GO:0003909
Bma07g00168 802 SUPERFAMILY Nucleic acid-binding proteins 642 788 IPR012340 -
Bma07g00168 802 PANTHER DNA LIGASE 1 137 802 - -
Bma07g00168 802 Pfam DNA ligase N terminus 195 363 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bma07g00168 802 Pfam ATP dependent DNA ligase C terminal region 659 770 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bma07g00168 802 Gene3D - 170 432 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bma07g00168 802 Coils Coil 156 176 - -
Bma07g00168 802 MobiDBLite consensus disorder prediction 63 100 - -
Bma07g00168 802 ProSitePatterns ATP-dependent DNA ligase signature 2. 608 634 IPR016059 GO:0003909
Bma07g00168 802 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 137 802 - -
Bma07g00168 802 CDD OBF_DNA_ligase_I 642 787 - -
Bma07g00168 802 ProSiteProfiles ATP-dependent DNA ligase family profile. 536 672 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bma07g00168 802 Pfam ATP dependent DNA ligase domain 430 634 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bma07g00168 802 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 253 785 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bma07g00168 802 CDD Adenylation_DNA_ligase_I_Euk 419 637 - -
Bma07g00168 802 Gene3D DNA ligase/mRNA capping enzyme 459 584 - -
Bma07g00168 802 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 176 420 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00491 Bma-Chr2:7947966 Bma07g00168 Bma-Chr7:2261324 3.25E-32 dispersed
Bma07g00168 Bma-Chr7:2261324 Bma07g00677 Bma-Chr7:12496748 1.09E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00168 K10747 - csv:101213447 1178.7