Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g00168 | ATGCTCTCACTGTGTCAATGCCATTGTCTAGCCCACGTCTCTCTCTTTCGCCATACCTCCCATTTCAGGAGAGCTATCTCTCTGTCTCTGATCGAAACCAGCTCCGTTTCTCTTAAGCCCTCCTTCTCTTTACGCTGTAAAAACGCCATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCCGCAGCCAAGAAAAAACCCCAACCTTCTTCTCCCAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTCCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGACAGTCGAGTTCTCGTCAGTTGTAATGGTCCTAGTTCAGGGGTTTACGCAGATACCCATAGTTCGTTAGATGTTGACCAAGTTGTGGAAAGTGGTTGTGATTTCGGAACCAAGAATGCACCGGTTGCGAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATTAGTAAATTGAAGAGTCGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCCGAAATCGGTCGCTTGTTGGAAAAATGGAGAACGCGTGCCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACAGATATAGTGTGCAATATGTTGAGGACTGTAATGCACTCCACGCCTGATGATTTGGTTGCCATCGTTTACCTTTCGGCCAACAAAATAGCTCCCTCGCATGAGGGGTTGGAGCTTGGAATAGGTGATGCCTCGATTATCAAAGCACTCGCAGAAGCTTTTGGGAGGACTGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCCATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTCGTAGCTGCCACTGACTGTGAACCCCTATATTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGGCAAGCTGCCGTATATGCTGAAAAACATTCTAAACCACCATCGCACATCCAATCTCCTTTAGAAGAGGCTACCAAGATTGTTAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCCGAGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAAACGTGTAGCTTTACACCAGGTGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAGGGTGTATCTGAGATCACAAATAAATTCCAGGACACGGAATTTACCTGTGAGTACAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATACAGCAGAAATGCAGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAAACACCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAAAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAATGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGTAGAGAGCACCTTTATAATTCGTTTTGTGAAGAAACTGGATACTTTCAGTTTGCGACAGCAATAACGACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACACTGCTGTTGATGAAAGTTGTGAGGGGTTAATTATCAAAACGTTAGATAGAGATGCAACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTATATTGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGAAAGCGAACAGGGGTTTATGGCGCATTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTGGATGAACGTTCTGCTAGTCTACGTTATAGAGTGATTACTGAACCGAAGTCTTACTATCGGTATGGGGACACGATCAATCCTGATGTGTGGTTTGAACCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATCGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGCAAGACAAGAATCCAGAACAAGCCTCGTCATCTGAGCAAGTGGCTGAGATGTATAATGCTCAAAAACACAATCAACATAACAACCAAGAAGACAATGAAGATGATTGA | 2409 | 42.88 | MLSLCQCHCLAHVSLFRHTSHFRRAISLSLIETSSVSLKPSFSLRCKNAMSSRPSAFDALMSGARAAAKKKPQPSSPKKRKTLDSSIPPLKPSPTKALDLPPAIEQQSDSRVLVSCNGPSSGVYADTHSSLDVDQVVESGCDFGTKNAPVAKKMCASSIEERISKLKSRISELKKKAKDFDPKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNMLRTVMHSTPDDLVAIVYLSANKIAPSHEGLELGIGDASIIKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALNVVKVFEESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPSHIQSPLEEATKIVKQVYSVLPVYDKIIPELLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEITNKFQDTEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKTPVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFCEETGYFQFATAITTNDLEEIQKFLDTAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRYRVITEPKSYYRYGDTINPDVWFEPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVRQDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD | 802 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2261324 | 2267288 | - | Bma024941.1 | Bma07g00168 | 85305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g00168 | 802 | MobiDBLite | consensus disorder prediction | 770 | 792 | - | - | |
Bma07g00168 | 802 | MobiDBLite | consensus disorder prediction | 767 | 802 | - | - | |
Bma07g00168 | 802 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 422 | 640 | - | - | |
Bma07g00168 | 802 | Gene3D | - | 639 | 801 | IPR012340 | - | |
Bma07g00168 | 802 | Gene3D | - | 440 | 638 | - | - | |
Bma07g00168 | 802 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 454 | 462 | IPR016059 | GO:0003909 | |
Bma07g00168 | 802 | SUPERFAMILY | Nucleic acid-binding proteins | 642 | 788 | IPR012340 | - | |
Bma07g00168 | 802 | PANTHER | DNA LIGASE 1 | 137 | 802 | - | - | |
Bma07g00168 | 802 | Pfam | DNA ligase N terminus | 195 | 363 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Bma07g00168 | 802 | Pfam | ATP dependent DNA ligase C terminal region | 659 | 770 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
Bma07g00168 | 802 | Gene3D | - | 170 | 432 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Bma07g00168 | 802 | Coils | Coil | 156 | 176 | - | - | |
Bma07g00168 | 802 | MobiDBLite | consensus disorder prediction | 63 | 100 | - | - | |
Bma07g00168 | 802 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 608 | 634 | IPR016059 | GO:0003909 | |
Bma07g00168 | 802 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 137 | 802 | - | - | |
Bma07g00168 | 802 | CDD | OBF_DNA_ligase_I | 642 | 787 | - | - | |
Bma07g00168 | 802 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 536 | 672 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Bma07g00168 | 802 | Pfam | ATP dependent DNA ligase domain | 430 | 634 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Bma07g00168 | 802 | TIGRFAM | dnl1: DNA ligase I, ATP-dependent (dnl1) | 253 | 785 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Bma07g00168 | 802 | CDD | Adenylation_DNA_ligase_I_Euk | 419 | 637 | - | - | |
Bma07g00168 | 802 | Gene3D | DNA ligase/mRNA capping enzyme | 459 | 584 | - | - | |
Bma07g00168 | 802 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 176 | 420 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00491 | Bma-Chr2:7947966 | Bma07g00168 | Bma-Chr7:2261324 | 3.25E-32 | dispersed | |
Bma07g00168 | Bma-Chr7:2261324 | Bma07g00677 | Bma-Chr7:12496748 | 1.09E-21 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g00168 | K10747 | - | csv:101213447 | 1178.7 |