Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00170 CGTTTTCGCTCAGATCAGATGGAACCATTCCCTACAAACCCACATCTGCAATTCCACGATTTCATCGCCGACCCTAATTTTGATCAGTTTGTCGATTTGATTCGCGGGGAACCCGTCTTCAACGTTGATCTCGATCTCGTCAATGGCTGCTTTGCGCATCCTGGGCTCAGTACGAGCCCTGAATTTGGGTTCGGTCCTGATCCGATCGCTGAGTTGGATCCGAGTTCTGTGTTTGAGGAGTTGGTGAGTTTTGATGGAGGAGAAACGAGGGCAAAGGAAGATGATAATGAGGTAGACGATTCTTCAGCAGCTGTAACAATGGCGACCAAAGATACGAAGGTTGATCGATCAAGAACTTTGATATCAGAGAGAAGAAGAAGAGGGAGAATGAAAGAGAAGCTTCACAATTTGCGCTCTTTAGTTCCGAATATAACAAAGATGGACAAGGCCTCCATTGTTGGAGATGCTGTTTCGTACGTGCAAGAACTTAAAATGCAGACGAAGAAGCTCAGATCAGAGATAGCTGTTCTGGAGGCATCCATAGCTGGATCAGAAAGCTATCACCTGCTAACAGAAAACCCTAGAAAAAAGCTTCGAGCTCCAATCACCCATAACCTAATCGTTCCAAAGAAAATTATCGATCAGATGGACGTGTTTCAAGTGGAGGAAAGAGGGTTTTACGTTAGACTGGTGGGTGAAAGAGGAAGAGGCGTAGCCATAGCACTGTACAAGGTTCTTGAATCCCTTACGAGCTTCAATCTTCAGAGCTCCAATTTGGCTATGGCGTCTGAGAGATTTGTCCTCACAGCTACCATGAATGTGAGGGATGGGGAGAAGGATACTAATTTGCCAAATTTGAAGCTTTGGGTGGCAGAGGCTCTTCTTGACCAGGGATTTGAACTTAGACCGCTGCATTAA 918 45.64 RFRSDQMEPFPTNPHLQFHDFIADPNFDQFVDLIRGEPVFNVDLDLVNGCFAHPGLSTSPEFGFGPDPIAELDPSSVFEELVSFDGGETRAKEDDNEVDDSSAAVTMATKDTKVDRSRTLISERRRRGRMKEKLHNLRSLVPNITKMDKASIVGDAVSYVQELKMQTKKLRSEIAVLEASIAGSESYHLLTENPRKKLRAPITHNLIVPKKIIDQMDVFQVEERGFYVRLVGERGRGVAIALYKVLESLTSFNLQSSNLAMASERFVLTATMNVRDGEKDTNLPNLKLWVAEALLDQGFELRPLH 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2274279 2275480 + Bma024943.1 Bma07g00170 85307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00170 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 88 300 - -
Bma07g00170 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 186 IPR036638 GO:0046983
Bma07g00170 305 SMART finulus 120 169 IPR011598 GO:0046983
Bma07g00170 305 Coils Coil 160 180 - -
Bma07g00170 305 Pfam Helix-loop-helix DNA-binding domain 119 163 IPR011598 GO:0046983
Bma07g00170 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Bma07g00170 305 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 88 300 - -
Bma07g00170 305 Gene3D - 106 180 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00170 Bma14g00439 CCT
Bma07g01474 Bma07g00170 CCT
Bma07g00170 Bma11g00199 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00170 Bma-Chr7:2274279 Bma11g00703 Bma-Chr11:16745683 1.07E-18 dispersed
Bma14g01796 Bma-Chr14:38542509 Bma07g00170 Bma-Chr7:2274279 1.97E-19 transposed
Bma11g00199 Bma-Chr11:1770220 Bma07g00170 Bma-Chr7:2274279 2.33E-162 wgd
Bma14g00439 Bma-Chr14:5095538 Bma07g00170 Bma-Chr7:2274279 1.53E-97 wgd
Bma07g00170 Bma-Chr7:2274279 Bma07g01474 Bma-Chr7:50374715 1.84E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57576 PF00010 HLH 6.50E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00170 - - tcc:18590468 308.145