Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bma07g00173	ATGGGCCAGATCCAGTACTCGGAGAAGTATTTCGATGACACTTACGAGTTCAGGCACGTGGTGCTTCCACCCGAAGTGGCAAAACTTCTTCCCAAGAATCGTCTGCTTTCCGAAAATGAATGGCGTGCAATTGGGGTTCAGCAGAGCCGTGGATGGGTACACTATGCAATTCATCGTCCTGAGCCACACATCATGCTATTCAGAAGGCCACTGAACTACCAACAGCAGCAGGAGAACCAAGTCGAGCAAAACGTTGTTGCTAACTGA	267	49.44	MGQIQYSEKYFDDTYEFRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQVEQNVVAN	88

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
7	2281998	2282883	-	Bma024946.1	Bma07g00173	85310

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bma07g00173	88	Gene3D	-	1	84	IPR036858	GO:0016538
Bma07g00173	88	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	1	84	-	-
Bma07g00173	88	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	1	84	-	-
Bma07g00173	88	SMART	CKS_2	3	72	IPR000789	GO:0016538
Bma07g00173	88	SUPERFAMILY	Cell cycle regulatory proteins	1	82	IPR036858	GO:0016538
Bma07g00173	88	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
Bma07g00173	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538
Bma07g00173	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	18	32	IPR000789	GO:0016538
Bma07g00173	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	55	69	IPR000789	GO:0016538
Bma07g00173	88	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bma07g00173	K02219	CKS1; cyclin-dependent kinase regulatory subunit CKS1	-	gmx:100786340	157.532

WGDs- Genes

Select	Gene_1	Gene_2	Event_name
	Bma07g00173	Bma14g00435	CCT

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bma06g00485	Bma-Chr6:22759195	Bma07g00173	Bma-Chr7:2281998	1.27E-40	transposed
	Bma14g00435	Bma-Chr14:5061378	Bma07g00173	Bma-Chr7:2281998	2.32E-32	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi6g1113	Blo03g01072	Blo03g01300	.	Bda09g01433	.	Bpe08g01297	Bma14g00435	.	.	Cmo13g00270	.	Cma13g00263	.	Car13g00200	Sed03g1855	.	Cpe20g00722	Bhi08g00132	Tan08g1166	Cmetu12g1345	Lac10g2066	Hepe10g0919	.	.	Cla02g02112	Cam02g2241	Cec02g2278	Cco02g2320	Clacu02g2221	Cmu02g2156	Cre02g2473	Cone1ag0502	.	Cone18ag0244	Cone11ag1331	.	Csa06g01245	Chy11g00854	.	.	.	.	Bda09g00223	Bpe08g00184	.	Bma07g00173	.	Sed01g3063	Cmo02g01407	Cmo20g00563	Cma02g01373	.	Car02g01152	Car20g00470	Cpe16g00498	.	Bhi10g00128	Tan05g0193	Cmetu11g2372	.	Hepe08g0936	.	.	.	.	.	.	.	.	.	.	Csa01g01406	Chy12g00760	Cme12g00492

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Bma03g00379	.	1	291	Core Cell Cycle Gene Families	AT3G48750	84.9	4.3e-148	520.8
Bma08g01208	.	1	291	Core Cell Cycle Gene Families	AT3G48750	85.6	7.4e-148	520.0
Bma15g00419	.	1	300	Core Cell Cycle Gene Families	AT3G48750	58.1	1.7e-96	349.4
Bma01g02422	.	11	307	Core Cell Cycle Gene Families	AT3G48750	52.0	4.4e-92	334.7
Bma12g00321	.	1	275	Core Cell Cycle Gene Families	AT3G48750	56.9	4.7e-86	314.7
Bma15g00419	.	1	305	Core Cell Cycle Gene Families	AT3G54180	80.6	3.6e-145	511.1
Bma12g00321	.	1	275	Core Cell Cycle Gene Families	AT3G54180	82.4	6.4e-134	473.8
Bma01g02422	.	11	310	Core Cell Cycle Gene Families	AT3G54180	65.5	1.2e-116	416.4
Bma03g00379	.	1	287	Core Cell Cycle Gene Families	AT3G54180	54.3	2.1e-89	325.9
Bma08g01208	.	1	287	Core Cell Cycle Gene Families	AT3G54180	54.3	2.1e-89	325.9
Bma15g00419	.	1	305	Core Cell Cycle Gene Families	AT2G38620	67.5	2.4e-115	411.8
Bma12g00321	.	1	275	Core Cell Cycle Gene Families	AT2G38620	68.4	3.3e-104	374.8
Bma01g02422	.	11	310	Core Cell Cycle Gene Families	AT2G38620	56.7	2.6e-93	338.6
Bma01g02422	.	1	307	Core Cell Cycle Gene Families	AT1G76540	83.4	2.5e-154	541.6
Bma15g00419	.	1	300	Core Cell Cycle Gene Families	AT1G76540	65.0	3.0e-115	411.8
Bma12g00321	.	1	275	Core Cell Cycle Gene Families	AT1G76540	64.7	2.8e-105	378.6
Bma03g00379	.	1	287	Core Cell Cycle Gene Families	AT1G76540	52.2	5.2e-91	331.3
Bma08g01208	.	1	287	Core Cell Cycle Gene Families	AT1G76540	52.5	6.8e-91	330.9
Bma01g02422	.	1	312	Core Cell Cycle Gene Families	AT1G20930	82.5	1.0e-155	546.2
Bma15g00419	.	1	305	Core Cell Cycle Gene Families	AT1G20930	65.4	5.0e-118	421.0
Bma12g00321	.	1	275	Core Cell Cycle Gene Families	AT1G20930	65.8	8.0e-108	387.1
Bma08g01208	.	1	287	Core Cell Cycle Gene Families	AT1G20930	53.9	8.6e-94	340.5
Bma03g00379	.	1	287	Core Cell Cycle Gene Families	AT1G20930	53.2	2.5e-93	339.0
Bma11g00324	.	1	532	Core Cell Cycle Gene Families	AT5G10270	72.2	1.5e-204	709.1
Bma04g00318	.	176	492	Core Cell Cycle Gene Families	AT5G10270	53.9	6.4e-99	358.2
Bma15g00068	.	147	473	Core Cell Cycle Gene Families	AT5G10270	51.3	1.9e-95	346.7
Bma02g01380	BCT	43	359	Core Cell Cycle Gene Families	AT5G10270	52.9	3.3e-95	345.9
Bma14g00238	.	48	355	Core Cell Cycle Gene Families	AT5G10270	54.6	5.6e-95	345.1
Bma12g00731	.	138	454	Core Cell Cycle Gene Families	AT5G10270	51.1	2.8e-94	342.8
Bma05g00317	.	115	430	Core Cell Cycle Gene Families	AT5G10270	52.3	3.6e-94	342.4
Bma06g00165	.	116	433	Core Cell Cycle Gene Families	AT5G10270	51.5	2.0e-92	336.7
Bma03g00839	.	116	412	Core Cell Cycle Gene Families	AT5G10270	53.0	2.3e-88	323.2
Bma06g00279	.	1	162	Core Cell Cycle Gene Families	AT5G10270	50.6	2.5e-42	170.2
Bma11g00324	.	65	531	Core Cell Cycle Gene Families	AT5G64960	72.6	1.0e-172	603.2
Bma14g00238	.	93	355	Core Cell Cycle Gene Families	AT5G64960	55.0	5.8e-83	305.1
Bma04g00318	.	230	492	Core Cell Cycle Gene Families	AT5G64960	54.3	9.9e-83	304.3
Bma02g01380	BCT	97	359	Core Cell Cycle Gene Families	AT5G64960	53.2	1.6e-80	297.0
Bma12g00731	.	192	456	Core Cell Cycle Gene Families	AT5G64960	51.1	7.9e-80	294.7
Bma15g00068	.	201	463	Core Cell Cycle Gene Families	AT5G64960	52.9	1.0e-79	294.3
Bma05g00317	.	166	430	Core Cell Cycle Gene Families	AT5G64960	51.1	1.8e-76	283.5
Bma12g00732	BCT	165	427	Core Cell Cycle Gene Families	AT5G64960	50.7	4.0e-76	282.3
Bma06g00165	.	170	435	Core Cell Cycle Gene Families	AT5G64960	50.5	4.0e-76	282.3
Bma03g00839	.	170	412	Core Cell Cycle Gene Families	AT5G64960	52.3	1.3e-71	267.3
Bma06g00279	.	1	152	Core Cell Cycle Gene Families	AT5G64960	51.0	5.5e-41	165.6
Bma15g00761	.	35	488	Core Cell Cycle Gene Families	AT5G63610	74.6	9.2e-193	669.8
Bma02g00209	CCT	4	475	Core Cell Cycle Gene Families	AT1G44110	59.9	7.2e-142	500.7
Bma01g00805	BCT	4	492	Core Cell Cycle Gene Families	AT1G44110	54.2	1.6e-133	473.0
Bma02g00210	BCT	2	257	Core Cell Cycle Gene Families	AT1G44110	61.3	2.4e-89	326.2
Bma01g02152	.	211	474	Core Cell Cycle Gene Families	AT1G44110	53.8	1.1e-81	300.8
Bma04g00147	BCT,CCT,ECH	28	289	Core Cell Cycle Gene Families	AT1G44110	50.8	2.3e-71	266.5
Bma01g02257	BCT,CCT,ECH	69	243	Core Cell Cycle Gene Families	AT1G44110	51.4	2.1e-48	190.3
Bma01g00805	BCT	223	490	Core Cell Cycle Gene Families	AT1G77390	61.6	4.7e-98	355.1
Bma02g00210	BCT	1	276	Core Cell Cycle Gene Families	AT1G77390	56.5	1.5e-83	307.0
Bma01g02152	.	211	472	Core Cell Cycle Gene Families	AT1G77390	53.1	1.6e-74	276.9
Bma01g02257	BCT,CCT,ECH	90	243	Core Cell Cycle Gene Families	AT1G77390	51.3	6.7e-44	175.3
Bma01g02152	.	7	474	Core Cell Cycle Gene Families	AT5G25380	53.0	1.6e-114	409.8
Bma02g00209	CCT	206	465	Core Cell Cycle Gene Families	AT5G25380	51.6	9.6e-75	277.7
Bma01g00805	BCT	223	482	Core Cell Cycle Gene Families	AT5G25380	50.9	6.9e-73	271.6
Bma04g00147	BCT,CCT,ECH	34	286	Core Cell Cycle Gene Families	AT5G25380	51.4	5.8e-72	268.5
Bma02g00210	BCT	2	258	Core Cell Cycle Gene Families	AT5G25380	52.5	3.5e-69	259.2
Bma01g02257	BCT,CCT,ECH	90	243	Core Cell Cycle Gene Families	AT5G25380	55.2	2.3e-44	176.8
Bma01g00805	BCT	225	430	Core Cell Cycle Gene Families	AT5G11300	55.7	2.3e-62	236.5
Bma02g00209	CCT	208	413	Core Cell Cycle Gene Families	AT5G11300	53.9	1.5e-61	233.8
Bma02g00210	BCT	2	209	Core Cell Cycle Gene Families	AT5G11300	55.3	7.4e-61	231.5
Bma04g00147	BCT,CCT,ECH	34	224	Core Cell Cycle Gene Families	AT5G11300	56.5	1.9e-56	216.9
Bma01g02257	BCT,CCT,ECH	90	243	Core Cell Cycle Gene Families	AT5G11300	57.1	2.5e-45	179.9
Bma01g02152	.	212	474	Core Cell Cycle Gene Families	AT1G15570	62.4	7.2e-94	341.3
Bma02g00209	CCT	206	472	Core Cell Cycle Gene Families	AT1G15570	52.1	1.7e-74	276.9
Bma04g00147	BCT,CCT,ECH	33	286	Core Cell Cycle Gene Families	AT1G15570	54.3	2.2e-74	276.6
Bma01g00805	BCT	223	489	Core Cell Cycle Gene Families	AT1G15570	51.4	2.8e-74	276.2
Bma02g00209	CCT	206	460	Core Cell Cycle Gene Families	AT1G80370	53.7	5.0e-74	275.4
Bma01g00805	BCT	223	477	Core Cell Cycle Gene Families	AT1G80370	53.0	7.2e-73	271.6
Bma04g00147	BCT,CCT,ECH	33	287	Core Cell Cycle Gene Families	AT1G80370	52.5	4.8e-69	258.8
Bma01g02257	BCT,CCT,ECH	90	243	Core Cell Cycle Gene Families	AT1G80370	55.2	1.4e-44	177.6
Bma04g00147	BCT,CCT,ECH	33	291	Core Cell Cycle Gene Families	AT5G43080	64.5	5.6e-94	341.3
Bma01g00805	BCT	226	492	Core Cell Cycle Gene Families	AT5G43080	50.4	3.1e-76	282.3
Bma01g02152	.	213	474	Core Cell Cycle Gene Families	AT5G43080	50.8	1.4e-73	273.5
Bma01g02257	BCT,CCT,ECH	3	243	Core Cell Cycle Gene Families	AT5G43080	57.1	1.6e-69	260.0
Bma04g00147	BCT,CCT,ECH	35	290	Core Cell Cycle Gene Families	AT1G47210	61.7	1.2e-91	333.6
Bma01g02152	.	213	472	Core Cell Cycle Gene Families	AT1G47210	50.8	9.9e-73	270.8
Bma01g02257	BCT,CCT,ECH	3	243	Core Cell Cycle Gene Families	AT1G47210	55.7	4.6e-70	261.9
Bma04g00147	BCT,CCT,ECH	31	290	Core Cell Cycle Gene Families	AT1G47220	58.5	1.9e-83	306.2
Bma01g02257	BCT,CCT,ECH	90	243	Core Cell Cycle Gene Families	AT1G47220	64.3	2.0e-53	206.5
Bma04g00147	BCT,CCT,ECH	31	290	Core Cell Cycle Gene Families	AT1G47230	60.5	2.6e-89	325.9
Bma01g02257	BCT,CCT,ECH	3	243	Core Cell Cycle Gene Families	AT1G47230	57.9	9.5e-68	254.2
Bma05g00047	CCT,ECH	1	193	Core Cell Cycle Gene Families	AT1G47230	52.5	2.5e-44	176.4
Bma01g02702	CCT	2	428	Core Cell Cycle Gene Families	AT4G37490	50.1	8.9e-102	367.5
Bma05g01330	.	2	276	Core Cell Cycle Gene Families	AT4G37490	62.1	1.1e-88	323.9
Bma11g00315	.	1	249	Core Cell Cycle Gene Families	AT4G37490	59.1	4.0e-78	288.9
Bma07g00293	.	1	249	Core Cell Cycle Gene Families	AT4G37490	56.7	2.5e-72	269.6
Bma09g00495	.	4	245	Core Cell Cycle Gene Families	AT4G37490	56.7	7.6e-69	258.1
Bma05g01330	.	1	167	Core Cell Cycle Gene Families	AT5G06150	65.9	2.4e-54	209.5
Bma01g00703	.	81	260	Core Cell Cycle Gene Families	AT5G06150	52.8	2.4e-49	193.0
Bma11g00315	.	1	145	Core Cell Cycle Gene Families	AT5G06150	66.2	2.9e-47	186.0
Bma06g00078	.	47	219	Core Cell Cycle Gene Families	AT5G06150	53.8	1.3e-44	177.2
Bma07g00293	.	1	143	Core Cell Cycle Gene Families	AT5G06150	64.3	2.5e-43	172.9
Bma09g00495	.	4	139	Core Cell Cycle Gene Families	AT5G06150	62.5	5.5e-38	155.2
Bma05g01330	.	1	234	Core Cell Cycle Gene Families	AT3G11520	62.8	3.6e-78	288.9
Bma11g00315	.	1	206	Core Cell Cycle Gene Families	AT3G11520	64.6	3.6e-70	262.3
Bma07g00293	.	1	207	Core Cell Cycle Gene Families	AT3G11520	62.3	4.2e-66	248.8
Bma01g00703	.	82	312	Core Cell Cycle Gene Families	AT3G11520	51.1	5.1e-64	241.9
Bma09g00495	.	5	203	Core Cell Cycle Gene Families	AT3G11520	62.3	1.3e-62	237.3
Bma01g02702	CCT	132	420	Core Cell Cycle Gene Families	AT2G26760	58.5	3.6e-94	342.0
Bma05g01330	.	4	270	Core Cell Cycle Gene Families	AT2G26760	57.3	1.8e-85	313.2
Bma11g00315	.	1	259	Core Cell Cycle Gene Families	AT2G26760	59.1	5.4e-82	301.6
Bma07g00293	.	4	243	Core Cell Cycle Gene Families	AT2G26760	61.7	1.2e-81	300.4
Bma09g00495	.	4	239	Core Cell Cycle Gene Families	AT2G26760	60.2	4.5e-76	282.0
Bma01g00703	.	19	355	Core Cell Cycle Gene Families	AT2G17620	55.0	4.4e-109	391.7
Bma06g00078	.	3	317	Core Cell Cycle Gene Families	AT2G17620	64.2	1.5e-104	376.7
Bma01g02408	.	12	302	Core Cell Cycle Gene Families	AT2G17620	60.6	5.2e-94	341.7
Bma11g00315	.	1	253	Core Cell Cycle Gene Families	AT2G17620	50.8	1.2e-58	224.2
Bma06g00078	.	3	278	Core Cell Cycle Gene Families	AT4G35620	64.2	4.8e-91	331.6
Bma01g00703	.	19	312	Core Cell Cycle Gene Families	AT4G35620	55.1	6.3e-91	331.3
Bma01g02408	.	17	263	Core Cell Cycle Gene Families	AT4G35620	62.4	1.6e-78	290.0
Bma11g00315	.	1	206	Core Cell Cycle Gene Families	AT4G35620	53.6	4.6e-49	192.2
Bma07g00293	.	1	207	Core Cell Cycle Gene Families	AT4G35620	51.4	3.6e-46	182.6
Bma09g00495	.	11	203	Core Cell Cycle Gene Families	AT4G35620	51.8	3.7e-43	172.6
Bma01g00703	.	5	355	Core Cell Cycle Gene Families	AT1G20610	58.8	1.2e-122	436.8
Bma01g02408	.	1	302	Core Cell Cycle Gene Families	AT1G20610	70.2	1.4e-115	413.3
Bma06g00078	.	23	317	Core Cell Cycle Gene Families	AT1G20610	63.8	7.3e-104	374.4
Bma01g00703	.	4	252	Core Cell Cycle Gene Families	AT1G76310	59.2	1.5e-83	306.6
Bma01g02408	.	1	195	Core Cell Cycle Gene Families	AT1G76310	71.8	4.3e-75	278.5
Bma06g00078	.	23	219	Core Cell Cycle Gene Families	AT1G76310	65.2	6.0e-69	258.1
Bma01g02702	CCT	159	319	Core Cell Cycle Gene Families	AT1G76310	52.7	9.1e-41	164.5
Bma05g01330	.	5	169	Core Cell Cycle Gene Families	AT1G76310	51.5	2.9e-39	159.5
Bma03g00492	.	74	366	Core Cell Cycle Gene Families	AT1G16330	58.8	1.7e-96	350.5
Bma14g01747	.	1	328	Core Cell Cycle Gene Families	AT1G70210	57.6	5.8e-96	347.8
Bma01g00063	BCT,CCT	1	313	Core Cell Cycle Gene Families	AT1G70210	59.7	1.9e-91	332.8
Bma06g00632	BCT,CCT	1	286	Core Cell Cycle Gene Families	AT1G70210	59.9	1.6e-85	313.2
Bma03g01358	.	1	323	Core Cell Cycle Gene Families	AT4G34160	50.6	1.7e-80	296.6
Bma03g01357	CCT,ECH	1	331	Core Cell Cycle Gene Families	AT4G34160	50.3	2.9e-80	295.8
Bma05g00507	CCT	76	322	Core Cell Cycle Gene Families	AT4G34160	51.2	5.7e-60	228.4
Bma05g00508	CCT,ECH	76	319	Core Cell Cycle Gene Families	AT4G34160	51.0	3.7e-59	225.7
Bma13g00840	.	1	197	Core Cell Cycle Gene Families	AT4G34160	51.8	2.0e-52	203.4
Bma13g00840	.	1	187	Core Cell Cycle Gene Families	AT5G67260	52.9	1.5e-50	197.2
Bma04g00152	CCT,ECH	59	228	Core Cell Cycle Gene Families	AT5G67260	51.5	4.2e-45	179.1
Bma13g00840	.	4	187	Core Cell Cycle Gene Families	AT3G50070	53.8	1.5e-49	193.7
Bma02g00120	CCT	61	265	Core Cell Cycle Gene Families	AT5G65420	53.6	3.8e-58	221.9
Bma01g02590	CCT	49	224	Core Cell Cycle Gene Families	AT5G10440	53.7	3.0e-48	188.7
Bma03g00713	CCT	471	681	Core Cell Cycle Gene Families	AT4G03270	50.5	3.3e-50	195.7
Bma07g00173	CCT	1	86	Core Cell Cycle Gene Families	AT2G27960	90.7	2.5e-43	171.0
Bma07g00173	CCT	1	83	Core Cell Cycle Gene Families	AT2G27970	85.5	2.5e-40	161.0
Bma08g00878	.	24	1024	Core Cell Cycle Gene Families	AT3G12280	70.5	0.0e+00	1331.6
Bma08g00875	.	21	1021	Core Cell Cycle Gene Families	AT3G12280	69.5	0.0e+00	1314.3

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0002221	3	2	1	3	2	2	3	2	2	2	2	2	1	2	2	3	2	3	3	2	1	2	2	0	2	0	2	3	3	1	60