Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00205 ATGGAGTCTCGCATGGATCAATACGAAATCATGGAGCAGATCGGCCGTGGTGCCTTCGGAGCCGCTATTCTCGTCCATCACAGAGCCGAGAAAACGAAGTACGTGTTGAAGAAGATCCGACTTGCGCGGCAGACTGAAAGGTGTCGACGATCAGCTCATCAAGAGATGGCTCTCATTGCTCGAATCCAACACGGGTGCTACGTTTGCATTGTCACTGGTTACTGTGAAGGCGGAGATATGGCAGAGCTAATGAAGAAATCAAATGGTGTATTTTTTCCAGAAGAGAAACTTTGCAAGTGGTTCACACAGCTACTATTGGCAGTTGAATATCTACATTCAAAATTTGTGTTACATCGCGACCTTAAATGTTCCAACATCTTTCTTACCAAGGATCAGAATGTTCGTCTTGGGGATTTTGGGCTTGCTAAAACTCTGAAAGCAGATGACTTGGCTTCTTCAATTATTAAATTATATTCAGAAATAGTTATGGTTTTCTACCAGGTTGTGGTCGGAACTCCCAATTACATGTGTCCTGAACTTTTGGCTGATATTCCTTATGGCTTCAAATCTGATATTTGGTCACTGGGTTGCTGTATGTATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGACTTATTAGCAAGATAAATCGTTCATCTATTGGACCCTTACCTCCATCCTATTCACCATCCTTGAAAACACTTATAAAGTGCATGCTTAGGAAGAACCCAGAGAATCGGCCAAGTGTAAGTCTCTTTTCTGAGGGTTTTTCAGACTTGAGTTCTTTCTTCCCTGATTGTTTAGGCTTGTACACATTTCAGGCATCTGAAATTTTGAAGCATCCTTATTTACAACCTTACTTGGAACAATGTCGTTCAACTTTTAATCCAGCTTACTATTCACTGACAAAGCCATTATCTTCTCGACGAAGTATGGCTGATAGTCAAAATAGTAACAGCTCAAGTAGTGATAAAGATAGTTTACTTTCAAGTGAGAAAAACATTTCAGAAATTATGGTGCACTGTGGCCATAAAGCTGCTGATTTGACTTCTGCTGATGATGAAGATGGTTCTTCTGAACACCTTCTGGCTTCTGAAGAAGAACAAGCCCACAACATTTGCACATTCAGAACGGAAGATCAAGAGGTCACGAAACCCTCACTTGAAACACCACGACCCAGTGTTGACATTAGACAACCAAAGACAATTAGAAGTATTATGATGAATTTAAAAGAAGGAAAAGTTCGAGAAAACTGTTCCCCAATGAGGGGCAATAGAATAAAAGTCGGAGGCGGACCAACCCAAAAGGTAAATATAGAAGCATCACCCAAGGTGATAAAACCAACTGCCACCCCCAATGCGCCAGTTCTTAAGCCCGGTGCAGATACTCCAACCATTGAGCCTGTAAAGGCAATTTCTGATTCTACAAAGAGAAATCATGGTTCAAATTCTTTAAAACATCAGTTGCCCATGGTGGACTCCACTCCAAAGACTAAAATGAAACATGATAGTATCCCGACCGGTGCAACAAAACAAGTTGCCGAAGATGGACCTACTGCAAAATCAAGGCAGAGAACACCTCCTTACCTTGCTAAACGACCCTCATTTCAAGCAAGGATGAGGCAACTGGGGAATGATGTTCCAGATTCAGCTTGTAATGCTGTGAAGACCAGTACTACTGATAGATATCTGGAGCCTGAGATGACCCCAAATCAAGCTGCCCCGCTTCATCTAAAACCTTTTTCTGAAGAGAAAGTTAAAGAAACGCCCAAGACTGCAGAAAGCAGAAGTTCCAAAGGAGTGCATACAGATACACGCAACTCTGTCTTCTCTTCCGTGTCAATTCCAGGTTTGGAAATATATGGTGAGGCGACAACTCCATTCACTGATCTGATGCATCCAATACCTTCTGATTACCGGAGTGGCGAACCTAAAACTACAAATCAAGAATCACAGCCACCTGGATACGCTCCTACTCAACATTTGCAACCTGGGACGTCAGAACAAGAATCGCTAAAGCTGTCTAAACATGATAACAAATCAGTAGGATGCTCTGTGAAAGATATTCTTGATCTTCAAAGTCCTAATGGTGGAAAGGAGAAATTGAGTACAGATGCATCAGATCCTCCTCCACGCCTGAATTCTGAAACAAACTTTGTCCGAAGAGATAATTTGCTGATGAACAAGCCTCAGAAGCACGACGCCACAATTTCATCTCAGGCATCACTGCTCAATGGTGATGACAAATTCACTGTTAGGGAACTTCTGTCTTCAGTTTCGGATACTAATCCTAAAGCGGTATCTCACTTATCATCAAGCCAAAAAGTTCTGCAGCCGGATAAAGAAATTTTGCTTGCTGAGAAACCAACCTCTTGCCATCTTCCCCAAGCTTTTGATGATGTCATACATGTAATACGGCACAGTACCTTCCGCGTTGGGAGTGAGCAGCCAGTTATGGAAACTGTGGAGGTGGGGGTTCAAAATGTCGATGTTGGTAAGTTCATAAATGTCGCAAGGGACGAAGTAGATGTGAAAAACTTGACCTCACCTATGACTCCTAAGCCAACTAGTGGCGCTGATACCATGACTTCCCAATCAAATATATCCGAGTATTCAAGTGGGATAGAAATGGATGTGAAAACCACATCCCCATTAGTACCAAAACTAGATTCCTCGGATCAAACAAAGGCCTGCTCTTCTGTCGCTGAAGAGGAAATGCCAGCAAAAGAAACGTTAGATGTCAATTCTTCAAGGCAGAGGGCTGAGGCACTTGAAGGATTGTTAGAATTATCTCAATTAAAGAGAAAAAGTGGTACGCCAGATTTTGAAGCTGAATCTAGTGATAGAGCTACTGGCCCTGGATTCCCTGAAGTATCCAGCAGCTCTCTTCAAACACCTGGATCTGTAAAAGGAGGAAAAAGAAGCAAATCAAGGCTTACAAAGTGCAGTGGATTGGTACCTCAAATTCCTGTTTCGAACGTAGTGACAGGTTCTCCTTCTGGCAATAATCTCACATCGGCAGGTCCTTGCCGTTATGACAGTTCCCTAGGTCTCTTGACAAAAAAGTTTATCAACCTAATCAAACAAGCAGAAGATGGTATCCTCGACCTGAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGCGAATATATGATATAACAAACGTCCTTGAAGGAATTGGCCTGATAGAAAAGAAGCTGAAAAACAGAATTCAATGGAAGGGGCTTGATGTGTCTAGGCCAGGGGATGATGATGGAAATTTTTCTAGCTTACAGGCAGAAGTCGAAAACCTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTAAGAGATCTCAGTGAAAATGACAACAATCAGAGGTGGCTTTTTGTCACTGAAGAAGATATCAAAGGTTTGCCTTGTTTCCAGAATGAAACGTTGATAGCTATTAAGGCTCCACATGGGACTACTTTAGAAGTACCTGATCCTGACGAGATTATGTGGCAGGCTGTTGACTATCCCCAAAGGAGGTACAGGATAGTCCTAAGAAGCACTATGGGTCCTATAGATGTTTACCTTGTCAGTCAATTTGAAGAGAAGTTTGAGGAGGTTAATGGTGTTGAAGTGCCTCTGACCACAACCTTACCTTCAACTTCCGGGTACGACGAGCCTCCCATGACAACAATGGAAATTGAAGAAAGTAGAGGGAAGAGTATTGAAATGCAAGAACCCGATGTTCATCAAATGTGCTCAGATCTTAGTGCTTCACAGGACTTTGTGGGTGGGATTATGAAGATTGTTCCCTCGGTAGTGGACAGTGACGCTGATTACTGGCTTCTATCAGACGCTGATGTTAGCATTACTGACATGTGGAGAACTGAAACTGGTGTTGAATGGAACGATTTGGGTACACTTCATGAAGATTACCCTATGTCCAGCATAGACGAGATATCCAATATCAGCTTGCCTCTTCCGCAGGCTTCACCAGCCCCATCTGCGGTAGGTGAATTACCTTCTAGTTCAAACCCTACTGGAAGTTGA 4059 42.65 MESRMDQYEIMEQIGRGAFGAAILVHHRAEKTKYVLKKIRLARQTERCRRSAHQEMALIARIQHGCYVCIVTGYCEGGDMAELMKKSNGVFFPEEKLCKWFTQLLLAVEYLHSKFVLHRDLKCSNIFLTKDQNVRLGDFGLAKTLKADDLASSIIKLYSEIVMVFYQVVVGTPNYMCPELLADIPYGFKSDIWSLGCCMYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPSYSPSLKTLIKCMLRKNPENRPSVSLFSEGFSDLSSFFPDCLGLYTFQASEILKHPYLQPYLEQCRSTFNPAYYSLTKPLSSRRSMADSQNSNSSSSDKDSLLSSEKNISEIMVHCGHKAADLTSADDEDGSSEHLLASEEEQAHNICTFRTEDQEVTKPSLETPRPSVDIRQPKTIRSIMMNLKEGKVRENCSPMRGNRIKVGGGPTQKVNIEASPKVIKPTATPNAPVLKPGADTPTIEPVKAISDSTKRNHGSNSLKHQLPMVDSTPKTKMKHDSIPTGATKQVAEDGPTAKSRQRTPPYLAKRPSFQARMRQLGNDVPDSACNAVKTSTTDRYLEPEMTPNQAAPLHLKPFSEEKVKETPKTAESRSSKGVHTDTRNSVFSSVSIPGLEIYGEATTPFTDLMHPIPSDYRSGEPKTTNQESQPPGYAPTQHLQPGTSEQESLKLSKHDNKSVGCSVKDILDLQSPNGGKEKLSTDASDPPPRLNSETNFVRRDNLLMNKPQKHDATISSQASLLNGDDKFTVRELLSSVSDTNPKAVSHLSSSQKVLQPDKEILLAEKPTSCHLPQAFDDVIHVIRHSTFRVGSEQPVMETVEVGVQNVDVGKFINVARDEVDVKNLTSPMTPKPTSGADTMTSQSNISEYSSGIEMDVKTTSPLVPKLDSSDQTKACSSVAEEEMPAKETLDVNSSRQRAEALEGLLELSQLKRKSGTPDFEAESSDRATGPGFPEVSSSSLQTPGSVKGGKRSKSRLTKCSGLVPQIPVSNVVTGSPSGNNLTSAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDDDGNFSSLQAEVENLSIEERGLDEQIREMQERLRDLSENDNNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEIMWQAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNGVEVPLTTTLPSTSGYDEPPMTTMEIEESRGKSIEMQEPDVHQMCSDLSASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTETGVEWNDLGTLHEDYPMSSIDEISNISLPLPQASPAPSAVGELPSSSNPTGS 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2489691 2505606 - Bma024977.2 Bma07g00205 85342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00205 1352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Bma07g00205 1352 Pfam E2F/DP family winged-helix DNA-binding domain 1018 1081 IPR003316 GO:0005667|GO:0006355
Bma07g00205 1352 MobiDBLite consensus disorder prediction 381 400 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 887 904 - -
Bma07g00205 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 280 614 - -
Bma07g00205 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 684 937 - -
Bma07g00205 1352 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Bma07g00205 1352 ProSiteProfiles Protein kinase domain profile. 8 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00205 1352 SUPERFAMILY Protein kinase-like (PK-like) 4 322 IPR011009 -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 958 976 - -
Bma07g00205 1352 SUPERFAMILY E2F-DP heterodimerization region 1094 1202 IPR037241 -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 474 496 - -
Bma07g00205 1352 Gene3D - 1011 1083 IPR036388 -
Bma07g00205 1352 Gene3D Transferase(Phosphotransferase) domain 1 80 352 - -
Bma07g00205 1352 Gene3D - 1091 1202 - -
Bma07g00205 1352 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 1328 1352 - -
Bma07g00205 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 280 614 - -
Bma07g00205 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 256 - -
Bma07g00205 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 684 937 - -
Bma07g00205 1352 SMART E2F_TDP_2 1016 1081 IPR003316 GO:0005667|GO:0006355
Bma07g00205 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 256 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 851 870 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 646 675 - -
Bma07g00205 1352 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00205 1352 SMART serkin_6 8 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00205 1352 MobiDBLite consensus disorder prediction 565 610 - -
Bma07g00205 1352 Coils Coil 1094 1128 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 887 983 - -
Bma07g00205 1352 Coils Coil 1032 1052 - -
Bma07g00205 1352 CDD E2F_DD 1095 1202 IPR032198 GO:0046983
Bma07g00205 1352 SUPERFAMILY Winged helix DNA-binding domain 1016 1079 IPR036390 -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 452 538 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 633 719 - -
Bma07g00205 1352 Pfam E2F transcription factor CC-MB domain 1097 1201 IPR032198 GO:0046983
Bma07g00205 1352 MobiDBLite consensus disorder prediction 585 606 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 854 870 - -
Bma07g00205 1352 CDD STKc_Nek 7 256 - -
Bma07g00205 1352 MobiDBLite consensus disorder prediction 311 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00205 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1] - qsu:112029840 975.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00205 Bma11g00246 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00197 Bma-Chr6:2405688 Bma07g00205 Bma-Chr7:2489691 8.20E-09 dispersed
Bma07g00205 Bma-Chr7:2489691 Bma13g00463 Bma-Chr13:8719873 8.60E-116 dispersed
Bma11g00249 Bma-Chr11:2181310 Bma07g00205 Bma-Chr7:2489691 0 transposed
Bma11g00246 Bma-Chr11:2168670 Bma07g00205 Bma-Chr7:2489691 0 wgd
Bma04g00537 Bma-Chr4:4712663 Bma07g00205 Bma-Chr7:2489691 6.04E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005272 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57580 PF00069 Pkinase 1.90E-50 CL0016 Bma TF
66583 PF00069 Pkinase 1.90E-50 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00205 Bma_Chr07 FPKM 0.0 0.0 10.311491 11.367941 16.220911 19.003658 16.332201 0.0 0.177312 0.130859