Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00208 ATGGAAGAAGAAGCCATTGAAGTTCCTTCTCATTTTCTCTGTCCTATTTCTCTGCAAATGATGAGAGATCCAGTTACTCTCTCAACAGGCATCACTTATGATCGAGGGAGCATTGAAAAATGGCTGTTTTCCTGCAAAAACCATTTCTGTCCAGTTACGAAGCAGGCTCTTTTTGATTTAGATCTGACCCCTAACCACACTCTCCGACGATTGATCCAAGCTTGGTGCTCGTTAAACGCCAGTAATGGCGTCGAGAGAATCCCCACTCCTAAGTCACAGCTCGACAAAGCCCAGATTATGAAAATCCTTACAGACGCTATCAAAGCGCCTAACATGAAGCTCATCTGCCTGCGAAAGCTCGGATCCATTGCTTCAGAAAGTGAAAGAAATAAAGCTCAGTTAGTTGCTGCAGGCGCATTAGAATTTTTAGCTTCGGCAATGAAGAACGAGGAAGATGAAACTGTCGCAGAAGCAGCCATTGAGATTCTTTTCGACCTCAAATCCTCAGAAGAACATCTCAAAATTCTCGTGAATAAAGATTTCGAATTTATTGATTCGTTAGTTCGAGTTTTGAAGATTGGAAACAACCAATCCAGAGCCTATGCAACGATGTTGCTAAAATCAATATTCAAAGTGGCCGATCCGATTCAATCTATGAGCGTGAACCGGAAAATTTTCGCCGAGATCGTTCATGTTATCCGAGACGAAATCTCCGAGCAAGTGTCAAAAAACGCTTTGAAGCTGTTGGCGGAGCTATGTCCATGGGGGAGAAATCGAATCAAAGCAGTGGAAGAAGGAGCAGTAATGGCGCTCATCGAACTTCTTCTAAACTCATCAGACAGGAGAATTTGCGAGCTTTCGCTCATAGTTCTTGACCAGCTCTGCGACTGCGCAGAGGGAAGAGCTCAGTTGATGGATCACGGAGGTGGGTTTGCCGTAATCTCAAAGAAATTACTTAGGGTTTCGAGAGTGGCAACTGACAGAGGAGTTAGAATATTTTCCTCCATTTGTAAGTTTTCTGCAACTTCTAGAGTTCTTCAGGAGATGATGGAGGTCGGTGTGGTGACGAAGCTGTGTTTGGTGGTGCAAATGGAGGTGAGTTTCAAGACAAAAGAGCGGGCTCGAGAAACCTTAAAATTACACTCTAGGGTTTGGAAAAATTCCCCCTGTATCCCTCCCCATTTATTGTCTTCTTATCCTTAA 1203 43.81 MEEEAIEVPSHFLCPISLQMMRDPVTLSTGITYDRGSIEKWLFSCKNHFCPVTKQALFDLDLTPNHTLRRLIQAWCSLNASNGVERIPTPKSQLDKAQIMKILTDAIKAPNMKLICLRKLGSIASESERNKAQLVAAGALEFLASAMKNEEDETVAEAAIEILFDLKSSEEHLKILVNKDFEFIDSLVRVLKIGNNQSRAYATMLLKSIFKVADPIQSMSVNRKIFAEIVHVIRDEISEQVSKNALKLLAELCPWGRNRIKAVEEGAVMALIELLLNSSDRRICELSLIVLDQLCDCAEGRAQLMDHGGGFAVISKKLLRVSRVATDRGVRIFSSICKFSATSRVLQEMMEVGVVTKLCLVVQMEVSFKTKERARETLKLHSRVWKNSPCIPPHLLSSYP 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2523075 2524277 - Bma024980.1 Bma07g00208 85345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00208 400 Gene3D - 77 384 IPR011989 -
Bma07g00208 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Bma07g00208 400 Pfam U-box domain 8 77 IPR003613 GO:0004842|GO:0016567
Bma07g00208 400 PANTHER WDSAM1 PROTEIN 2 400 IPR045185 GO:0061630
Bma07g00208 400 SUPERFAMILY ARM repeat 95 374 IPR016024 -
Bma07g00208 400 SUPERFAMILY RING/U-box 2 79 - -
Bma07g00208 400 ProSiteProfiles U-box domain profile. 7 82 IPR003613 GO:0004842|GO:0016567
Bma07g00208 400 PANTHER OS11G0573500 PROTEIN 2 400 - -
Bma07g00208 400 SMART Ubox_2 11 75 IPR003613 GO:0004842|GO:0016567
Bma07g00208 400 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01537 Bma-Chr4:51425901 Bma07g00208 Bma-Chr7:2523075 1.12E-99 dispersed
Bma07g00208 Bma-Chr7:2523075 Bma07g00213 Bma-Chr7:2566670 0 dispersed
Bma08g00115 Bma-Chr8:1430525 Bma07g00208 Bma-Chr7:2523075 6.73E-54 dispersed
Bma07g00207 Bma-Chr7:2517885 Bma07g00208 Bma-Chr7:2523075 3.98E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00208 - - qsu:112009329 544.658