Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00220 TTGGTTTTTATACAGGGAGACATTAGAAAGTGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCATCAAAGCCTGCAAAACCAGCGTCAGGCCCTTCAGAAAAACCTTCTTCAGCTAAGTTGCAGCCTGATAAATCAGTATGCTTTACGAATCTCTTTACTTGTCATTATGTTAAGGTAGAAGAAACTCACGGAAGTGCGAGCAGAAGGAAAACTAGCAAGTATTTTGCCAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACCAAAAGAAAGACGCAAGAGGATAGTGAGAACCTAGAGAAAAGTAGACCGTCAAAAAAAAATTGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCACTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTCCTCAGAAACCTATGAATGTCGAAGAAAGTGATGAGGATGAAGATAAAAACACTGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGCGGCAGGGGCTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGTCGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGTAGGTGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACTGGATCTGTTAGCAAGAAAACAAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCGACAATAAGGTGGGTACAAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAGTGAGAAAACTGAACGTTCTACGCTGACATGGACAGAAAAATATAAACCAAAGGTTCCAAATGACATTATTGGTAATCAGTCACTGGTCAAGCAACTTCATGACTGGTTGGCACACTGGAAAGAGAACTTTCTTGATCTTGGAAACAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTAAGTGGAACACCTGGCATTGGGAAAACTACATCGGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAACAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCACCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTAAAGAGTCTTGTCAATTACTGTTTGCTTCTCAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCAGGTTGCAAAAGCTGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCCATGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCAGTTACAACTCTAGCAAGTTGAAGATGGATGAACGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTTGTTCAGGAAAATTACCTTAACTATAGATCAAATTTAGTTGGCAAGGATGACAATGGGATAAAACGCATGGACTGTATTGCTCGTGCTGCTGAATCCATTGCCGATGGAGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAACTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCACGTTCTGGCTTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGCATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTAAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGAGGAGGTGTTAGGTGATGGTGATGGAGATAAGCTGGAAGATAGTGAAGAAGAGAGATCTTCAGACACAGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGGACGAAAGTTCAGTTGGATTTGAAGGGCAAAGTAAATTCGAACACCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCGGCCAAGAAAGGTGGGAGTGGGAGAGCCTCAGCACCCACTGCCAAAAGAAAGAGATGA 2889 41.78 LVFIQGDIRKWFMKSHDKGNGDASKPAKPASGPSEKPSSAKLQPDKSVCFTNLFTCHYVKVEETHGSASRRKTSKYFAKGENEEQNEELLTKRKTQEDSENLEKSRPSKKNCKVDVDDDDDLVFSTSRKDLVGTTPNKKLKSGSGKGIPQKPMNVEESDEDEDKNTELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPVGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKPLPRKSPQKVELKKGIDNKVGTNVTDKGFTKVTSPALGKSEKTERSTLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWKENFLDLGNKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQTIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVTMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVHGDMRMAINQLQYMSLSLSVIKLFSYNSSKLKMDERIGLSMSDPDLVPLLVQENYLNYRSNLVGKDDNGIKRMDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSEEVLGDGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2616295 2624510 + Bma024992.1 Bma07g00220 85357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00220 962 CDD AAA 417 520 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 866 962 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 153 170 - -
Bma07g00220 962 PIRSF RFC1 4 612 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bma07g00220 962 PIRSF RFC1 607 935 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bma07g00220 962 MobiDBLite consensus disorder prediction 311 330 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 305 330 - -
Bma07g00220 962 CDD BRCT_RFC1 220 298 - -
Bma07g00220 962 SMART AAA_5 420 558 IPR003593 -
Bma07g00220 962 PANTHER REPLICATION FACTOR C SUBUNIT 1 56 932 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 63 215 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 882 903 - -
Bma07g00220 962 SUPERFAMILY BRCT domain 223 300 IPR036420 -
Bma07g00220 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 605 IPR027417 -
Bma07g00220 962 MobiDBLite consensus disorder prediction 904 934 - -
Bma07g00220 962 Gene3D - 611 714 - -
Bma07g00220 962 Pfam Replication factor RFC1 C terminal domain 672 834 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Bma07g00220 962 MobiDBLite consensus disorder prediction 63 126 - -
Bma07g00220 962 CDD HLD_clamp_RFC 557 610 - -
Bma07g00220 962 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 56 932 - -
Bma07g00220 962 Gene3D - 559 610 - -
Bma07g00220 962 ProSiteProfiles BRCT domain profile. 220 298 IPR001357 -
Bma07g00220 962 SMART BRCT_7 222 300 IPR001357 -
Bma07g00220 962 Pfam BRCA1 C Terminus (BRCT) domain 224 297 IPR001357 -
Bma07g00220 962 Pfam ATPase family associated with various cellular activities (AAA) 424 523 IPR003959 GO:0005524|GO:0016887
Bma07g00220 962 MobiDBLite consensus disorder prediction 14 43 - -
Bma07g00220 962 Gene3D BRCT domain 197 299 IPR036420 -
Bma07g00220 962 SUPERFAMILY post-AAA+ oligomerization domain-like 613 748 IPR008921 GO:0003677|GO:0006260
Bma07g00220 962 Gene3D - 368 556 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00220 Bma-Chr7:2616295 Bma01g01795 Bma-Chr1:62670901 1.05E-07 dispersed
Bma07g00220 Bma-Chr7:2616295 Bma01g02668 Bma-Chr1:84176956 6.49E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00220 K10754 - qsu:112040745 1223.76