Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00220 TTGGTTTTTATACAGGGAGACATTAGAAAGTGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCATCAAAGCCTGCAAAACCAGCGTCAGGCCCTTCAGAAAAACCTTCTTCAGCTAAGTTGCAGCCTGATAAATCAGTATGCTTTACGAATCTCTTTACTTGTCATTATGTTAAGGTAGAAGAAACTCACGGAAGTGCGAGCAGAAGGAAAACTAGCAAGTATTTTGCCAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACCAAAAGAAAGACGCAAGAGGATAGTGAGAACCTAGAGAAAAGTAGACCGTCAAAAAAAAATTGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCACTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTCCTCAGAAACCTATGAATGTCGAAGAAAGTGATGAGGATGAAGATAAAAACACTGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGCGGCAGGGGCTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGTCGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGTAGGTGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACTGGATCTGTTAGCAAGAAAACAAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCGACAATAAGGTGGGTACAAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAGTGAGAAAACTGAACGTTCTACGCTGACATGGACAGAAAAATATAAACCAAAGGTTCCAAATGACATTATTGGTAATCAGTCACTGGTCAAGCAACTTCATGACTGGTTGGCACACTGGAAAGAGAACTTTCTTGATCTTGGAAACAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTAAGTGGAACACCTGGCATTGGGAAAACTACATCGGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAACAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCACCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTAAAGAGTCTTGTCAATTACTGTTTGCTTCTCAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCAGGTTGCAAAAGCTGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCCATGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCAGTTACAACTCTAGCAAGTTGAAGATGGATGAACGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTTGTTCAGGAAAATTACCTTAACTATAGATCAAATTTAGTTGGCAAGGATGACAATGGGATAAAACGCATGGACTGTATTGCTCGTGCTGCTGAATCCATTGCCGATGGAGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAACTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCACGTTCTGGCTTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGCATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTAAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGAGGAGGTGTTAGGTGATGGTGATGGAGATAAGCTGGAAGATAGTGAAGAAGAGAGATCTTCAGACACAGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGGACGAAAGTTCAGTTGGATTTGAAGGGCAAAGTAAATTCGAACACCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCGGCCAAGAAAGGTGGGAGTGGGAGAGCCTCAGCACCCACTGCCAAAAGAAAGAGATGA 2889 41.78 LVFIQGDIRKWFMKSHDKGNGDASKPAKPASGPSEKPSSAKLQPDKSVCFTNLFTCHYVKVEETHGSASRRKTSKYFAKGENEEQNEELLTKRKTQEDSENLEKSRPSKKNCKVDVDDDDDLVFSTSRKDLVGTTPNKKLKSGSGKGIPQKPMNVEESDEDEDKNTELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPVGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKPLPRKSPQKVELKKGIDNKVGTNVTDKGFTKVTSPALGKSEKTERSTLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWKENFLDLGNKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQTIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVTMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVHGDMRMAINQLQYMSLSLSVIKLFSYNSSKLKMDERIGLSMSDPDLVPLLVQENYLNYRSNLVGKDDNGIKRMDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSEEVLGDGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2616295 2624510 + Bma024992.1 Bma07g00220 85357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00220 962 CDD AAA 417 520 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 866 962 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 153 170 - -
Bma07g00220 962 PIRSF RFC1 4 612 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bma07g00220 962 PIRSF RFC1 607 935 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bma07g00220 962 MobiDBLite consensus disorder prediction 311 330 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 305 330 - -
Bma07g00220 962 CDD BRCT_RFC1 220 298 - -
Bma07g00220 962 SMART AAA_5 420 558 IPR003593 -
Bma07g00220 962 PANTHER REPLICATION FACTOR C SUBUNIT 1 56 932 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 63 215 - -
Bma07g00220 962 MobiDBLite consensus disorder prediction 882 903 - -
Bma07g00220 962 SUPERFAMILY BRCT domain 223 300 IPR036420 -
Bma07g00220 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 605 IPR027417 -
Bma07g00220 962 MobiDBLite consensus disorder prediction 904 934 - -
Bma07g00220 962 Gene3D - 611 714 - -
Bma07g00220 962 Pfam Replication factor RFC1 C terminal domain 672 834 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Bma07g00220 962 MobiDBLite consensus disorder prediction 63 126 - -
Bma07g00220 962 CDD HLD_clamp_RFC 557 610 - -
Bma07g00220 962 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 56 932 - -
Bma07g00220 962 Gene3D - 559 610 - -
Bma07g00220 962 ProSiteProfiles BRCT domain profile. 220 298 IPR001357 -
Bma07g00220 962 SMART BRCT_7 222 300 IPR001357 -
Bma07g00220 962 Pfam BRCA1 C Terminus (BRCT) domain 224 297 IPR001357 -
Bma07g00220 962 Pfam ATPase family associated with various cellular activities (AAA) 424 523 IPR003959 GO:0005524|GO:0016887
Bma07g00220 962 MobiDBLite consensus disorder prediction 14 43 - -
Bma07g00220 962 Gene3D BRCT domain 197 299 IPR036420 -
Bma07g00220 962 SUPERFAMILY post-AAA+ oligomerization domain-like 613 748 IPR008921 GO:0003677|GO:0006260
Bma07g00220 962 Gene3D - 368 556 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00220 K10754 RFC1; replication factor C subunit 1 - qsu:112040745 1223.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00220 Bma-Chr7:2616295 Bma01g01795 Bma-Chr1:62670901 1.05E-07 dispersed
Bma07g00220 Bma-Chr7:2616295 Bma01g02668 Bma-Chr1:84176956 6.49E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00768 . 145 883 Core DNA Replication Machinery Family AT4G14700 65.9 6.9e-281 963.4
Bma14g00768 . 80 883 Core DNA Replication Machinery Family AT4G12620 63.2 4.5e-288 987.3
Bma05g00078 . 7 368 Core DNA Replication Machinery Family AT2G37560 64.9 1.4e-134 476.1
Bma05g00061 . 7 360 Core DNA Replication Machinery Family AT2G37560 65.8 1.8e-132 469.2
Bma11g00406 . 7 279 Core DNA Replication Machinery Family AT2G37560 54.3 4.1e-97 351.7
Bma01g00448 . 1 415 Core DNA Replication Machinery Family AT2G01120 61.1 1.2e-138 490.0
Bma01g00093 . 1 319 Core DNA Replication Machinery Family AT1G26840 59.9 1.0e-93 340.1
Bma12g00588 . 1 799 Core DNA Replication Machinery Family AT1G79150 55.6 8.0e-232 800.4
Bma07g01373 . 1 940 Core DNA Replication Machinery Family AT1G44900 76.2 0.0e+00 1368.6
Bma03g00566 BCT 4 728 Core DNA Replication Machinery Family AT2G16440 73.9 5.4e-313 1070.1
Bma01g00291 . 936 1699 Core DNA Replication Machinery Family AT2G07690 74.1 0.0e+00 1086.6
Bma07g00859 . 1 836 Core DNA Replication Machinery Family AT5G44635 70.2 0.0e+00 1139.4
Bma15g00493 CCT 18 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1188.7
Bma11g00084 . 40 509 Core DNA Replication Machinery Family AT2G29680 57.2 5.2e-149 524.6
Bma11g00084 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.6 6.1e-136 481.1
Bma12g00066 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 8.2e-255 876.3
Bma09g00801 . 3 596 Core DNA Replication Machinery Family AT3G25100 76.8 7.7e-253 869.8
Bma15g00665 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-252 868.2
Bma04g01647 . 22 728 Core DNA Replication Machinery Family AT3G09660 60.8 6.2e-250 860.5
Bma10g01097 CCT 1 610 Core DNA Replication Machinery Family AT2G14050 76.2 1.2e-270 929.1
Bma03g01547 . 1 246 Core DNA Replication Machinery Family AT2G14050 74.9 3.2e-95 346.3
Bma03g01549 . 9 260 Core DNA Replication Machinery Family AT2G14050 56.9 7.4e-76 282.0
Bma05g00365 . 6 353 Core DNA Replication Machinery Family AT2G20980 54.6 5.2e-104 374.8
Bma15g00229 . 1 228 Core DNA Replication Machinery Family AT1G77320 71.9 2.9e-95 347.1
Bma13g00787 . 1 191 Core DNA Replication Machinery Family AT1G80190 69.1 7.5e-75 276.9
Bma14g00519 . 2 192 Core DNA Replication Machinery Family AT1G80190 69.1 1.7e-74 275.8
Bma14g00698 . 2 192 Core DNA Replication Machinery Family AT1G80190 68.0 1.1e-73 273.1
Bma08g00026 . 1 191 Core DNA Replication Machinery Family AT1G80190 67.5 3.1e-73 271.6
Bma05g00599 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma07g00894 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT1G19080 65.9 6.2e-68 253.8
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT3G55490 65.9 6.2e-68 253.8
Bma02g00932 . 15 163 Core DNA Replication Machinery Family AT5G49010 64.0 1.5e-48 189.5
Bma15g00244 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.1 2.4e-217 751.9
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma05g00872 . 1 453 Core DNA Replication Machinery Family AT5G41880 65.3 7.8e-181 630.2
Bma09g00431 . 27 1152 Core DNA Replication Machinery Family AT5G63960 74.7 0.0e+00 1696.8
Bma10g00174 . 4 437 Core DNA Replication Machinery Family AT2G42120 76.0 1.4e-198 689.1
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma11g00219 . 2 1474 Core DNA Replication Machinery Family AT1G08260 76.5 0.0e+00 2272.7
Bma11g00219 . 23 1474 Core DNA Replication Machinery Family AT2G27120 74.1 0.0e+00 2150.6
Bma12g01277 . 7 486 Core DNA Replication Machinery Family AT5G22110 70.3 1.6e-195 679.1
Bma03g00647 . 22 198 Core DNA Replication Machinery Family AT5G22110 56.8 1.2e-54 211.1
Bma07g00220 . 7 911 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-287 986.1
Bma05g00808 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 4.6e-170 594.0
Bma01g02668 BCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.4e-177 619.0
Bma01g01795 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 2.4e-177 618.2
Bma04g00016 BCT 1 336 Core DNA Replication Machinery Family AT1G21690 81.3 1.5e-152 535.8
Bma02g00213 BCT 1 339 Core DNA Replication Machinery Family AT1G77470 71.4 6.2e-144 507.3
Bma01g00807 BCT 1 283 Core DNA Replication Machinery Family AT1G77470 57.4 1.3e-93 340.1
Bma06g00893 . 1 450 Core DNA Replication Machinery Family AT2G06510 77.2 3.3e-214 741.5
Bma12g00253 . 2 454 Core DNA Replication Machinery Family AT2G06510 65.5 1.9e-185 646.0
Bma12g00964 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.1e-242 835.1
Bma08g00242 CCT 1 591 Core DNA Replication Machinery Family AT5G08020 62.5 1.0e-220 763.1
Bma12g00253 . 1 558 Core DNA Replication Machinery Family AT5G45400 62.8 2.4e-207 719.2
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT5G45400 63.0 6.8e-170 594.7
Bma12g00964 CCT 1 624 Core DNA Replication Machinery Family AT5G61000 64.8 6.2e-237 817.0
Bma08g00242 CCT 1 585 Core DNA Replication Machinery Family AT5G61000 61.7 9.4e-217 750.0
Bma12g00253 . 2 579 Core DNA Replication Machinery Family AT4G19130 60.7 7.9e-205 710.7
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT4G19130 60.3 2.3e-164 576.2
Bma01g00646 . 1 361 Core DNA Replication Machinery Family AT5G26680 83.9 7.4e-178 620.2
Bma02g01168 . 1 1131 Core DNA Replication Machinery Family AT1G08840 50.7 1.5e-288 989.2
Bma08g00918 . 1 295 Core DNA Replication Machinery Family AT2G25100 68.2 1.6e-115 412.5
Bma08g00503 . 1 239 Core DNA Replication Machinery Family AT2G25100 72.4 1.0e-98 356.7
Bma07g00168 . 46 802 Core DNA Replication Machinery Family AT1G08130 67.6 1.4e-286 982.2
Bma07g00168 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.0e-231 797.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00220 Bma_Chr07 FPKM 0.184946 0.0 1.38561 1.114773 2.983798 1.861402 0.750605 2.414201 2.775374 2.778991