Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g00220 | TTGGTTTTTATACAGGGAGACATTAGAAAGTGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCATCAAAGCCTGCAAAACCAGCGTCAGGCCCTTCAGAAAAACCTTCTTCAGCTAAGTTGCAGCCTGATAAATCAGTATGCTTTACGAATCTCTTTACTTGTCATTATGTTAAGGTAGAAGAAACTCACGGAAGTGCGAGCAGAAGGAAAACTAGCAAGTATTTTGCCAAGGGTGAAAATGAAGAACAGAATGAGGAACTTCTTACCAAAAGAAAGACGCAAGAGGATAGTGAGAACCTAGAGAAAAGTAGACCGTCAAAAAAAAATTGCAAAGTTGATGTTGATGACGATGATGATCTTGTCTTCTCTACCTCAAGAAAAGATTTGGTTGGCACCACTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTCCTCAGAAACCTATGAATGTCGAAGAAAGTGATGAGGATGAAGATAAAAACACTGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGCGGCAGGGGCTCATCTGCAGCACCAGCTGGTGGAAGGGGTAGAGGCAGTGGTCGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGTAGGTGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATTAAACGCCATGGTGGTCGTGTAACTGGATCTGTTAGCAAGAAAACAAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTAACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAGGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGATGAGGACATTAAACCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCGACAATAAGGTGGGTACAAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCCCTGCTTTGGGTAAAAGTGAGAAAACTGAACGTTCTACGCTGACATGGACAGAAAAATATAAACCAAAGGTTCCAAATGACATTATTGGTAATCAGTCACTGGTCAAGCAACTTCATGACTGGTTGGCACACTGGAAAGAGAACTTTCTTGATCTTGGAAACAAGAAAAAGGGCAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTAAGTGGAACACCTGGCATTGGGAAAACTACATCGGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAACAATAGAGGTCAATGCCAGTGATCATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAGCAATGTGGCTCTAAATGTCACCATGGATTGGTCAAAACACCCAAAAATGGTGTTGATAATGGACGAGGTTGACGGAATGTCGGCTGGAGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCCAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTAAAGAGTCTTGTCAATTACTGTTTGCTTCTCAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTAATGCAGGTTGCAAAAGCTGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCCATGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTTGTTCAGTTACAACTCTAGCAAGTTGAAGATGGATGAACGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTTGTTCAGGAAAATTACCTTAACTATAGATCAAATTTAGTTGGCAAGGATGACAATGGGATAAAACGCATGGACTGTATTGCTCGTGCTGCTGAATCCATTGCCGATGGAGATATAATTAATGTACAGATTCGAAGAAACCGTCAGTGGCAACTCTCTCAATGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAACTCAACTATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCACGTTCTGGCTTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGTATCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTCCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTATGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGCATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTAAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCAGCAATTTTGGAGCCATCTGAGGAGGTGTTAGGTGATGGTGATGGAGATAAGCTGGAAGATAGTGAAGAAGAGAGATCTTCAGACACAGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTCGAGACTCTGAATTCAAAAGGGACGAAAGTTCAGTTGGATTTGAAGGGCAAAGTAAATTCGAACACCAAGAAGTCAGCCGGGAGAGGAAAAGGTGGCTCTGAAGCTTCTTCGGCCAAGAAAGGTGGGAGTGGGAGAGCCTCAGCACCCACTGCCAAAAGAAAGAGATGA | 2889 | 41.78 | LVFIQGDIRKWFMKSHDKGNGDASKPAKPASGPSEKPSSAKLQPDKSVCFTNLFTCHYVKVEETHGSASRRKTSKYFAKGENEEQNEELLTKRKTQEDSENLEKSRPSKKNCKVDVDDDDDLVFSTSRKDLVGTTPNKKLKSGSGKGIPQKPMNVEESDEDEDKNTELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPVGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKPLPRKSPQKVELKKGIDNKVGTNVTDKGFTKVTSPALGKSEKTERSTLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWKENFLDLGNKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQTIEVNASDHRGKADAKIGKGIGGSNANSVKELISNVALNVTMDWSKHPKMVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVHGDMRMAINQLQYMSLSLSVIKLFSYNSSKLKMDERIGLSMSDPDLVPLLVQENYLNYRSNLVGKDDNGIKRMDCIARAAESIADGDIINVQIRRNRQWQLSQCATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHVLASRESSSGRETIRVEYLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSEEVLGDGDGDKLEDSEEERSSDTESLDDGSKGEKLQQELETLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR | 962 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2616295 | 2624510 | + | Bma024992.1 | Bma07g00220 | 85357 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g00220 | 962 | CDD | AAA | 417 | 520 | - | - | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 866 | 962 | - | - | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 153 | 170 | - | - | |
Bma07g00220 | 962 | PIRSF | RFC1 | 4 | 612 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
Bma07g00220 | 962 | PIRSF | RFC1 | 607 | 935 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 311 | 330 | - | - | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 305 | 330 | - | - | |
Bma07g00220 | 962 | CDD | BRCT_RFC1 | 220 | 298 | - | - | |
Bma07g00220 | 962 | SMART | AAA_5 | 420 | 558 | IPR003593 | - | |
Bma07g00220 | 962 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 56 | 932 | - | - | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 63 | 215 | - | - | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 882 | 903 | - | - | |
Bma07g00220 | 962 | SUPERFAMILY | BRCT domain | 223 | 300 | IPR036420 | - | |
Bma07g00220 | 962 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 369 | 605 | IPR027417 | - | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 904 | 934 | - | - | |
Bma07g00220 | 962 | Gene3D | - | 611 | 714 | - | - | |
Bma07g00220 | 962 | Pfam | Replication factor RFC1 C terminal domain | 672 | 834 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 63 | 126 | - | - | |
Bma07g00220 | 962 | CDD | HLD_clamp_RFC | 557 | 610 | - | - | |
Bma07g00220 | 962 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 56 | 932 | - | - | |
Bma07g00220 | 962 | Gene3D | - | 559 | 610 | - | - | |
Bma07g00220 | 962 | ProSiteProfiles | BRCT domain profile. | 220 | 298 | IPR001357 | - | |
Bma07g00220 | 962 | SMART | BRCT_7 | 222 | 300 | IPR001357 | - | |
Bma07g00220 | 962 | Pfam | BRCA1 C Terminus (BRCT) domain | 224 | 297 | IPR001357 | - | |
Bma07g00220 | 962 | Pfam | ATPase family associated with various cellular activities (AAA) | 424 | 523 | IPR003959 | GO:0005524|GO:0016887 | |
Bma07g00220 | 962 | MobiDBLite | consensus disorder prediction | 14 | 43 | - | - | |
Bma07g00220 | 962 | Gene3D | BRCT domain | 197 | 299 | IPR036420 | - | |
Bma07g00220 | 962 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 613 | 748 | IPR008921 | GO:0003677|GO:0006260 | |
Bma07g00220 | 962 | Gene3D | - | 368 | 556 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00220 | Bma-Chr7:2616295 | Bma01g01795 | Bma-Chr1:62670901 | 1.05E-07 | dispersed | |
Bma07g00220 | Bma-Chr7:2616295 | Bma01g02668 | Bma-Chr1:84176956 | 6.49E-08 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g00220 | K10754 | - | qsu:112040745 | 1223.76 |