Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g00265 | ATGCAGCCAAAGCCTGAAAATGTAAATCGATTAGAATCAGATCTACATTCCATCCATCCAATCAGCAATTATACTGAGCCATGGTGGCTGGGGTATAATCCTATCTCTGCACAGATGATGGGGAGAAACCCTTCAATTCCAAACTCTTTGGAGCACACCGATGGTAATTCAAAGTCCAGTGATCATCAGTCCATGTCAGATAATGATCTGAACGAAGAAGATGATGGTACCTCCAAAAAAGTCCAACCTATCGCATCACCATCAACGGTTACAGCTTCTGGTTTTGGAAAAGAACAACAAAATTGCCAGCATGTTGTTCCCGCTATCCCCATGATGCGCAGTGAATCTAACAGCCAACCTCCTCAGCTGGAGCTTATTGGTCACTCTATTGCTTGTGCACCAAATCAATATCAGGATTCATATGTGGGTGGAATCGTGGCCGCTTGTGGGCATCAGCCTTTGGTTTATCCTCCTTATCTTGGAATGCCACATGCTAGAATGCCATTGCCTCTTGAGATGGCTCAAGAGCCTGTCTTTGTGAATGCCAAACAATACCAGGGGATTATAAGGCGAAGACAAGCTCGTGCTAAAGCTGAGGTCGAGAAGAAACTGATAAAAGTTAGAAAGCCCTATCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGACCAAGAGGCAGCGGAGGACGTTTTGCGAAGAAAAGCAAAATGGATGCTTTGAACCGTCCGGCAGAAGAAAGGGGTACCACTTCTGGTTCTCCCCTCTTCACACTCTGCTAG | 780 | 45.64 | MQPKPENVNRLESDLHSIHPISNYTEPWWLGYNPISAQMMGRNPSIPNSLEHTDGNSKSSDHQSMSDNDLNEEDDGTSKKVQPIASPSTVTASGFGKEQQNCQHVVPAIPMMRSESNSQPPQLELIGHSIACAPNQYQDSYVGGIVAACGHQPLVYPPYLGMPHARMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLIKVRKPYLHESRHQHAMRRPRGSGGRFAKKSKMDALNRPAEERGTTSGSPLFTLC | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3247422 | 3250387 | + | Bma025041.1 | Bma07g00265 | 85402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g00265 | 259 | PRINTS | CCAAT-binding transcription factor subunit B signature | 177 | 199 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00265 | 259 | PRINTS | CCAAT-binding transcription factor subunit B signature | 208 | 231 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00265 | 259 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 179 | 199 | IPR018362 | GO:0003677|GO:0016602 | |
Bma07g00265 | 259 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 37 | 240 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00265 | 259 | Gene3D | - | 174 | 235 | - | - | |
Bma07g00265 | 259 | MobiDBLite | consensus disorder prediction | 65 | 79 | - | - | |
Bma07g00265 | 259 | MobiDBLite | consensus disorder prediction | 214 | 230 | - | - | |
Bma07g00265 | 259 | ProSiteProfiles | NF-YA/HAP2 family profile. | 174 | 234 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00265 | 259 | MobiDBLite | consensus disorder prediction | 81 | 98 | - | - | |
Bma07g00265 | 259 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 37 | 240 | - | - | |
Bma07g00265 | 259 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
Bma07g00265 | 259 | MobiDBLite | consensus disorder prediction | 214 | 259 | - | - | |
Bma07g00265 | 259 | MobiDBLite | consensus disorder prediction | 41 | 98 | - | - | |
Bma07g00265 | 259 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 176 | 231 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00265 | 259 | SMART | cbf3 | 173 | 234 | IPR001289 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma07g00265 | Bma14g00770 | CCT | |
Bma07g01396 | Bma07g00265 | CCT | |
Bma07g00265 | Bma14g00770 | ECH | |
Bma07g01396 | Bma07g00265 | ECH | |
Bma07g00265 | Bma07g01396 | ECH | |
Bma07g00265 | Bma11g00292 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00265 | Bma-Chr7:3247422 | Bma07g01396 | Bma-Chr7:49752772 | 1.38E-70 | dispersed | |
Bma11g00292 | Bma-Chr11:2745528 | Bma07g00265 | Bma-Chr7:3247422 | 4.59E-119 | wgd | |
Bma14g00770 | Bma-Chr14:8563570 | Bma07g00265 | Bma-Chr7:3247422 | 4.36E-66 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57587 | PF02045 | CBFB_NFYA | 7.10E-27 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g00265 | K08064 | - | jre:109019615 | 321.627 |