Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00265 ATGCAGCCAAAGCCTGAAAATGTAAATCGATTAGAATCAGATCTACATTCCATCCATCCAATCAGCAATTATACTGAGCCATGGTGGCTGGGGTATAATCCTATCTCTGCACAGATGATGGGGAGAAACCCTTCAATTCCAAACTCTTTGGAGCACACCGATGGTAATTCAAAGTCCAGTGATCATCAGTCCATGTCAGATAATGATCTGAACGAAGAAGATGATGGTACCTCCAAAAAAGTCCAACCTATCGCATCACCATCAACGGTTACAGCTTCTGGTTTTGGAAAAGAACAACAAAATTGCCAGCATGTTGTTCCCGCTATCCCCATGATGCGCAGTGAATCTAACAGCCAACCTCCTCAGCTGGAGCTTATTGGTCACTCTATTGCTTGTGCACCAAATCAATATCAGGATTCATATGTGGGTGGAATCGTGGCCGCTTGTGGGCATCAGCCTTTGGTTTATCCTCCTTATCTTGGAATGCCACATGCTAGAATGCCATTGCCTCTTGAGATGGCTCAAGAGCCTGTCTTTGTGAATGCCAAACAATACCAGGGGATTATAAGGCGAAGACAAGCTCGTGCTAAAGCTGAGGTCGAGAAGAAACTGATAAAAGTTAGAAAGCCCTATCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGACCAAGAGGCAGCGGAGGACGTTTTGCGAAGAAAAGCAAAATGGATGCTTTGAACCGTCCGGCAGAAGAAAGGGGTACCACTTCTGGTTCTCCCCTCTTCACACTCTGCTAG 780 45.64 MQPKPENVNRLESDLHSIHPISNYTEPWWLGYNPISAQMMGRNPSIPNSLEHTDGNSKSSDHQSMSDNDLNEEDDGTSKKVQPIASPSTVTASGFGKEQQNCQHVVPAIPMMRSESNSQPPQLELIGHSIACAPNQYQDSYVGGIVAACGHQPLVYPPYLGMPHARMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLIKVRKPYLHESRHQHAMRRPRGSGGRFAKKSKMDALNRPAEERGTTSGSPLFTLC 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3247422 3250387 + Bma025041.1 Bma07g00265 85402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00265 259 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Bma07g00265 259 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Bma07g00265 259 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Bma07g00265 259 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 240 IPR001289 GO:0003700|GO:0006355
Bma07g00265 259 Gene3D - 174 235 - -
Bma07g00265 259 MobiDBLite consensus disorder prediction 65 79 - -
Bma07g00265 259 MobiDBLite consensus disorder prediction 214 230 - -
Bma07g00265 259 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Bma07g00265 259 MobiDBLite consensus disorder prediction 81 98 - -
Bma07g00265 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 37 240 - -
Bma07g00265 259 MobiDBLite consensus disorder prediction 41 64 - -
Bma07g00265 259 MobiDBLite consensus disorder prediction 214 259 - -
Bma07g00265 259 MobiDBLite consensus disorder prediction 41 98 - -
Bma07g00265 259 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Bma07g00265 259 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00265 Bma14g00770 CCT
Bma07g01396 Bma07g00265 CCT
Bma07g00265 Bma14g00770 ECH
Bma07g01396 Bma07g00265 ECH
Bma07g00265 Bma07g01396 ECH
Bma07g00265 Bma11g00292 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00265 Bma-Chr7:3247422 Bma07g01396 Bma-Chr7:49752772 1.38E-70 dispersed
Bma11g00292 Bma-Chr11:2745528 Bma07g00265 Bma-Chr7:3247422 4.59E-119 wgd
Bma14g00770 Bma-Chr14:8563570 Bma07g00265 Bma-Chr7:3247422 4.36E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57587 PF02045 CBFB_NFYA 7.10E-27 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00265 K08064 - jre:109019615 321.627