Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00281 ATGGTGGGTCTACGCGATGTCTTTGTTGTAGCACCCGCCTCCTCCTTCAACCCTAATAATCATGTTCATCATCCGCATGAAACCATCAATCCCGATCATCACTCCTTTAACAGCTCAAACCAAGCGACGGCCCTCGGAGTCGGCGTCGGCGTTATTCCTCTCCTCACTGCGGCTCACCTCGCTCCGCATGGCGTTGTCGGTGAAGATCAAGAGGGTTTAGTGGGTAGAAGCCGAGGTGGTGGAGTTCAGCTATGGCAGACTCCGCAGTTAAACCATTTTCACTACCTGAAGAAACAAGCTCCTTTCGATAATGATAACAATTCTGCAAATTTAGTCCTGAGTGGAGGTGGTAACTTTGGAGGAGCTTCTGTGTCTGAGTCTGCTCCTTCATCGACCTTGACTTGCCAAGACTGTGGAAATCAAGCGAAGAAAGATTGTAGCCATAGGCGTTGCAGAACTTGCTGCAGAAGTCGAGGTTTCGATTGTTCAACTCATGTTAGAAGTACTTGGGTGCCAGCTGCTCGCCGGAGAGAGCGGCAATCAATGACGGTCGGTGCTTCTCCGGCCGCAGGGTCTTCTGCATCGACCTCCGGCGCCAAGAAACCCAGACTCATAACTTCACAAACAACAACCACCTCTCATACTTCTACTTCTAACACCACTCCTAGAAGCTTTGACACAAGCTCCAGCCAGCCAGATGTAAGTTTTAAGGAGTCATTTCCTGGTCAAGTTCGAGCGCCGGCAGTTTTCAAATGCGTTAGAGTGACGGCAGTGGAAGATGGAGAAGACGAGTACGCTTACCAAGCAGTCGTCCAAATCGGCGGCCATGTTTTCAAAGGTTTTTTGTACGATCAAGGTGTAGAATCAAGAGGTGGGTTTCCAAACATGTCTGATCTGCATTTAAGCTGTAGAAGTGACGGAGCTGCCGGAGATGTCATAGAATCCGGCGAAGGCGGAGGAGGAAGAAATAGAGCCTCATCTCCAGTTCTTAATCATCCCTTGGATGTTTATGCGGCCTCCGGCGGCGGAGGATTGCTTGGAGGTTCTAGCTATGGTAACCCTATGAACTCATAA 1074 49.81 MVGLRDVFVVAPASSFNPNNHVHHPHETINPDHHSFNSSNQATALGVGVGVIPLLTAAHLAPHGVVGEDQEGLVGRSRGGGVQLWQTPQLNHFHYLKKQAPFDNDNNSANLVLSGGGNFGGASVSESAPSSTLTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVRSTWVPAARRRERQSMTVGASPAAGSSASTSGAKKPRLITSQTTTTSHTSTSNTTPRSFDTSSSQPDVSFKESFPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVQIGGHVFKGFLYDQGVESRGGFPNMSDLHLSCRSDGAAGDVIESGEGGGGRNRASSPVLNHPLDVYAASGGGGLLGGSSYGNPMNS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3479871 3481053 + Bma025062.1 Bma07g00281 85418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00281 357 Pfam Domain of unknown function (DUF702) 132 288 - -
Bma07g00281 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 356 - -
Bma07g00281 357 MobiDBLite consensus disorder prediction 173 238 - -
Bma07g00281 357 MobiDBLite consensus disorder prediction 18 37 - -
Bma07g00281 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 356 IPR007818 GO:0003700|GO:0006355
Bma07g00281 357 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 240 287 IPR006511 -
Bma07g00281 357 MobiDBLite consensus disorder prediction 185 237 - -
Bma07g00281 357 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 134 176 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g01484 Bma07g00281 CCT
Bma07g00281 Bma14g00754 CCT
Bma07g00281 Bma11g00303 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00281 Bma-Chr7:3479871 Bma01g00741 Bma-Chr1:6793248 7.09E-46 dispersed
Bma11g00303 Bma-Chr11:2862855 Bma07g00281 Bma-Chr7:3479871 3.41E-165 wgd
Bma14g00754 Bma-Chr14:8388277 Bma07g00281 Bma-Chr7:3479871 2.40E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57589 PF05142 DUF702 3.70E-62 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00281 - - jre:108994634 412.535