Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma07g00293 | ATGCATACGTTTTACAAGCTGACAGAAGATGAGAACAGAGTGGATGACTATATGAGTTCACAGAAATACATAAATGTTAAAATGAGATCAATTCTAATAGACTGGTTGATCGAAGTTCATCGTAAATTTGAACTCTGCCCAGAAACTCTTTACTTGACTGTACATATTGTTGATAGATTTCTCTCCATCACAAAAGTTCAAAGAACAGAACTTCAATTAGTTGGCATAAGCTCCATGCTCTTGGCTTGCAAGTACGAAGAAATCTGGGCTCCAGGGGTTAATGATTTTGTAAGCATATCTGCTAATGCTTACGTGAGAGAACAAATTCTTGTAATGGAGAAAGCAATTCTTGAAAAGCTTCAATGGCGTTTAACAGTTCCAACTCCTTACGTTTTCCTCGTTCGGTACATTAAAGCTTCAGAATCATCTGATATGGAGATGGAAAATACAGTGTATTTTCTTGCTGAACTCGGCTTGATGCATTATCCCACAATGGTTTCTCATCGCCCTTCCATGGTTGCCGCTTCTGCTGTTTATGCCGCAAGATGTACACTTGATAAACGTCCTTCTTGGACTGCAACTCTAGAACACCACACAGGCTACTGCGAAAACCAACTAATCGACTGCGCCAAAATCTTGGTTGGCTTGCATGTGGGAGCGGCGGAGAACAAGCTCAGAGCAGTATATCGTAAATTCAAGAACCACGATCGTTGTGCAGTTGCTCTTCTCGATCCAGCAACCAAGTTAAGTGGACATTCTTTGGATTTCCACTAA | 774 | 40.83 | MHTFYKLTEDENRVDDYMSSQKYINVKMRSILIDWLIEVHRKFELCPETLYLTVHIVDRFLSITKVQRTELQLVGISSMLLACKYEEIWAPGVNDFVSISANAYVREQILVMEKAILEKLQWRLTVPTPYVFLVRYIKASESSDMEMENTVYFLAELGLMHYPTMVSHRPSMVAASAVYAARCTLDKRPSWTATLEHHTGYCENQLIDCAKILVGLHVGAAENKLRAVYRKFKNHDRCAVALLDPATKLSGHSLDFH | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3670622 | 3671735 | - | Bma025071.1 | Bma07g00293 | 85430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma07g00293 | 257 | SMART | cyclin_7 | 34 | 118 | IPR013763 | - | |
| Bma07g00293 | 257 | SMART | cyclin_7 | 131 | 215 | IPR013763 | - | |
| Bma07g00293 | 257 | ProSitePatterns | Cyclins signature. | 29 | 60 | IPR006671 | - | |
| Bma07g00293 | 257 | Gene3D | - | 119 | 254 | - | - | |
| Bma07g00293 | 257 | CDD | CYCLIN | 125 | 214 | IPR013763 | - | |
| Bma07g00293 | 257 | PANTHER | CYCLINS | 1 | 247 | IPR039361 | - | |
| Bma07g00293 | 257 | PANTHER | CYCLIN-B1-4 | 1 | 247 | - | - | |
| Bma07g00293 | 257 | CDD | CYCLIN | 28 | 117 | IPR013763 | - | |
| Bma07g00293 | 257 | SUPERFAMILY | Cyclin-like | 128 | 247 | IPR036915 | - | |
| Bma07g00293 | 257 | Gene3D | - | 14 | 118 | - | - | |
| Bma07g00293 | 257 | Pfam | Cyclin, N-terminal domain | 7 | 124 | IPR006671 | - | |
| Bma07g00293 | 257 | SUPERFAMILY | Cyclin-like | 13 | 124 | IPR036915 | - | |
| Bma07g00293 | 257 | SMART | Cyclin_C_2 | 127 | 246 | IPR004367 | - | |
| Bma07g00293 | 257 | Pfam | Cyclin, C-terminal domain | 127 | 244 | IPR004367 | - | |
| Bma07g00293 | 257 | PIRSF | Cyclin_A_B_D_E | 1 | 256 | IPR039361 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma05g01330 | Bma-Chr5:52864423 | Bma07g00293 | Bma-Chr7:3670622 | 6.19E-113 | dispersed | |
| Bma07g00293 | Bma-Chr7:3670622 | Bma02g00209 | Bma-Chr2:2255994 | 4.11E-49 | dispersed | |
| Bma09g00495 | Bma-Chr9:41061080 | Bma07g00293 | Bma-Chr7:3670622 | 2.55E-179 | transposed | |
| Bma11g00315 | Bma-Chr11:2966020 | Bma07g00293 | Bma-Chr7:3670622 | 1.12E-148 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma07g00293 | K21777 | - | twl:120008028 | 372.859 |