Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00295 ATGGCAGCTTCTCTTTCTTCGGTGGTACTGGTCGTAGTACTAATGCATCTTCTAGCACCAACCCTCGTTTCATCTTCGCCGGTTCAAGACCCTGAATTAATCGTAGAAGAAGTTCTTACGAGCATCAACAATGCCTCCATTAGCAGAAGAAATCTAGCTTCGTGTAGTACAGGCAACCCCATTGACGACTGCTGGAGGTGCGACTCCAATTGGGCGACTAACCGGAAGCGTCTAGCTGATTGTGCCATCGGCTTTGGCAAGGGGGCGATCGGCGGGAGAAATGGAAAGATTTACGTCGTCACTGATCCAACCGACAAAGACCTCGTAAACCCTAAACCAGGCACTCTCCGTTACGCGGTCATACAAGACGAGCCCCTCTGGATCATCTTCAGTCGAGATATGGTCATCAAGCTAAAAGCGGAGCTCATCATGAACTCCTTCAAGACCATCGACGGCCGCGGAGCCAACGTCCACATCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACGAACATCATAATTCACGGAATCAGCATTCACGATTGCAAGGTCGGTGGGAACACCTACGTGAGAGACTCGCCGGATCATTACGGCTGGCGGACGTTGTCAGATGGAGATGGGATTTCTATCTTCGGAGGAAGCTATGTTTGGGTGGACCATTGCTCTCTGTCTAACTGCAAAGACGGTCTGATAGACGCCATTCGTGGATCGACCGCCATAACCATATCTAACAATTACATGACCCATCACGGCAAAGTCATGCTATTAGGCCACAGCGATTCCTACAAACAAGACAAGAACATGCAAGTCACCATAGCTTTCAACCATTTCGGAGAAGGACTAATCCAGAGAATGCCAAGATGCAGACATGGGTATTTCCACGTCGTGAATAATGACTACACTCATTGGGTCATGTATGCCATCGGCGGTAGCGCAGCTCCGACGATCAACAGCCAAGGCAACAGATTTCTAGCCCCAGACGATGCTGTCCACAAAGAGGTAACGAAGCACGAGAACACAGCGGAGAGAGAATGGAGAAACTGGAACTGGAGATCGCAGGGAGATTTGATGCTAAACGGTGCGTTTTTCACGAGATCTGGATCGGCAGGGTCCTCCAGCTACGCCAAGGCGTCGAGCGTGAGCGCAAGACCGGTGTCGCTAGTGAGCTCACTCACCGCCGGCGCCGGCGCTCTTAGATGCAAAAAGGGTTCTCTTTGCTGA 1224 51.14 MAASLSSVVLVVVLMHLLAPTLVSSSPVQDPELIVEEVLTSINNASISRRNLASCSTGNPIDDCWRCDSNWATNRKRLADCAIGFGKGAIGGRNGKIYVVTDPTDKDLVNPKPGTLRYAVIQDEPLWIIFSRDMVIKLKAELIMNSFKTIDGRGANVHIAGGPCITIQYVTNIIIHGISIHDCKVGGNTYVRDSPDHYGWRTLSDGDGISIFGGSYVWVDHCSLSNCKDGLIDAIRGSTAITISNNYMTHHGKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAAPTINSQGNRFLAPDDAVHKEVTKHENTAEREWRNWNWRSQGDLMLNGAFFTRSGSAGSSSYAKASSVSARPVSLVSSLTAGAGALRCKKGSLC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3681275 3682781 - Bma025073.1 Bma07g00295 85432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00295 407 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Bma07g00295 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Bma07g00295 407 PANTHER PECTATE LYASE 18-RELATED 11 404 IPR045032 GO:0030570
Bma07g00295 407 Gene3D - 58 400 IPR012334 -
Bma07g00295 407 PANTHER PECTATE LYASE 11 404 - -
Bma07g00295 407 Pfam Pectate lyase 141 324 IPR002022 -
Bma07g00295 407 SMART amb_all 133 330 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00295 Bma-Chr7:3681275 Bma13g00568 Bma-Chr13:12104081 0 dispersed
Bma11g00322 Bma-Chr11:3033648 Bma07g00295 Bma-Chr7:3681275 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00295 K01728 - csv:101208076 671.003