Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00301 ATGGGTTCTCATGAACCTGATGGAAATGGGGCAGAAGCTATTTTGCCTCCACCTCCTGCTTTAATTCCACCAGATGTAGTTCCTGAGCGAGTTGAACAAGAAAAAATCAGTGAAGCGAAGAAAAAAGTTGTTCGAACCCCAATATCTCGTCGGGGTTTCGGATCGAAGGGGCAAAAAATAACCCTTCTCACGAACCATTTTAAAGTCAACGTGTCTAACCTCGAAGGGTGTTTTTTCCATTATAGTGTTGCTCTTTCTTTTGAAGATGGCACCCCTGTTGAGCAAAAGGGTGTTGGAAGAAAAGTAATTGATAGGGTGTATGAGACTTACAATAGTGAATTGGCGGGAAAAAACTTTGCTTACGACGGCGAGAAGAGTTTGTTCACTTTTGGTCCGCTCCCACGTAATAAACTTGAATTTACTGTCGTGCTTGAGAACATCTCATCCAATAGAAATGCTGGTAATTCTAGTCCTGACCATCAAGGAAGCCCTAATGATACTGATCGTAAAAGGCAGCGTCGTCCATATCAGTCAAAGGTTTTTAAGGTGGAGATAAGCTTTGCTGCTAAGATTCCTACCCAGTCAATTGCAAGTGCCCTTAAGGGGCAGGAGTCAGAAAATTCCCAGGAGGCAATAAGGGTTCTGGATATTATCTTACGGCAGCATGCATCTAAACAAGGTTGTCTACTTGTGAGGCAATCATTCTTCCACAACAATCCTAAGAATTTTGCTGATGTGGGAGGTGGTGTTCTTGGATGTCGTGGATTTCATTCAAGTTTTAGAACAACACAGGGTGGACTGTCTCTGAATATTGATGTTTCTACGACCATGATCATACAACCTGGGCCTGTGGTAGATTTTTTAATTGCCAATCAGAATGCAAAAGATCCCTTTTCGCTTGATTGGGCTAAGGCAAAGCGCACGTTGAAAAATTTGAGGATCAAGGCAAGTCCATCAAATATGGAATATAAGATAACTGGATTGAGTGAGCAAATGTGCAAAGATCAAACGTTTACAATGAAACAAAAAAATGGAAGAGATGGTGATGATGCTGAAACGACAGAGGTTACAGTTTATGATTATTTTGTTAACCATCGGCGGATTGAGTTGCGATATTCTGGTGATCTACCTTGTATTAATGTAGGGAAGCCTAAGAAACCAACTTACATCCCCATTGAGCTTTGCACTTTGGTGTCATTGCAACGATATACCAAAGCATTGTCGACTTTCCAAAGAGCTGCATTGGTGGAGAAGTCAAGGCAAAAGCCGCAAGAGCGGATGAGGGTCTTAACTGAATCTTTAAAAAGCAGCAATTATGAGTCAGAACCAATGCTTCGATCGTGCGGTATTTCAATCAGCAACAACTTTACGCAAGTAGAAGGTCGTGTTCTGTCAGCTCCCAGATTAAAAGTTGGTAATGGCGAAGACTTCTTTCCGAGAAATGGGAGATGGAACTTTAACAACAAAAAACTAGTGCAGCCGGCCAAGATTGAACGGTGGGCTATAGCTAACTTCTCAGCTCGCTGTGACATCCGAGGGCTTGTACGAGACCTCACAAAATGTGCTGAAATGAAAGGAATTGGAATCGAAGCACCATTTGACGTCTTTGAAGAAAGTCCACAGTACAGACGTGCTCCACCAATGGTTAGAGTGGAAAAGATGTTTGAGGAAATACAATCAAAACTTCCTGGGCAGCCAGGATTTCTCTTGTGTTTGCTGCCTGAAAGAAAGAATTGTGATGTTTATGGTCCATGGAAGCGAAAGAATCTTGCTGAGTATGGTATTCCTACCCAATGCATTGCTCCTACTAGGGTCAATGATCAATACCTTACAAATGTTCTTTTGAAAATCAACGCCAAGCTTGGGGGTTTAAATTCCTTGCTAACTGTTGAGCACACCCCTTCAATTCCTCTAGTGTCTAAAGTTCCAACCATTATTGTTGGAATGGACGTGTCCCACGGATCTCCTGGCCAATTTGATGTACCATCAATTGCTGCGGTAGTCAGCTCCAGGCAGTGGCCACTTATCTCTCGCTATCGAGCTAGCGTTCGAACCCAGTCTCCTAAGTTAGAAATGATTGATTCTCTATACAAACGAATATCTGACTCTCAGGATGATGGGATTTTTAGGGAGCTTCTGCTTGACTTCTACACTAGTTCAGGAAAAAGAAAACCAGATCAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAATTTAACCAAGTCTTGAACATAGAGTTAAATCAAATGATAGAGGCTTGCAAGTTTCTCGATGAAAAATGGTCTCCAAAGTTTGTTGTCATAATTGCTCAGAAAAACCATCATACAAAATTTTTCCAATCCGGATCGCCAGATAATGTTCCTCCTGGTACCGTGATAGATAACAAAATTTGTCACCCTCGCAACAATGACTTCTATATGTGCGCCCATGCTGGGATGATTGGAACTACACGGCCCACACATTATCATGTTTTGTACGATGAAGTTGGTTTTTCAGCTGATGACCTTCAGGAACTTGTTCATTCGCTGTCATATGTGTACCAAAGAAGTACAACTGCTGTCTCTGTTGTGGCTCCAATTTGCTACGCCCATTTGGCAGCAACCCAAATGGGGCAGTTCATAAAGTTCGAGGAAGTGTCCGAGACCTCATCCAGCCAGGGTGGTTTGACGTCTGCGGGGGCGGTCCCTGTCCCACAATTGCCGAGGCTGCAGGAGAAAGTTTGTAACTCCATGTTTTTCTGTTGA 2748 42.65 MGSHEPDGNGAEAILPPPPALIPPDVVPERVEQEKISEAKKKVVRTPISRRGFGSKGQKITLLTNHFKVNVSNLEGCFFHYSVALSFEDGTPVEQKGVGRKVIDRVYETYNSELAGKNFAYDGEKSLFTFGPLPRNKLEFTVVLENISSNRNAGNSSPDHQGSPNDTDRKRQRRPYQSKVFKVEISFAAKIPTQSIASALKGQESENSQEAIRVLDIILRQHASKQGCLLVRQSFFHNNPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNAKDPFSLDWAKAKRTLKNLRIKASPSNMEYKITGLSEQMCKDQTFTMKQKNGRDGDDAETTEVTVYDYFVNHRRIELRYSGDLPCINVGKPKKPTYIPIELCTLVSLQRYTKALSTFQRAALVEKSRQKPQERMRVLTESLKSSNYESEPMLRSCGISISNNFTQVEGRVLSAPRLKVGNGEDFFPRNGRWNFNNKKLVQPAKIERWAIANFSARCDIRGLVRDLTKCAEMKGIGIEAPFDVFEESPQYRRAPPMVRVEKMFEEIQSKLPGQPGFLLCLLPERKNCDVYGPWKRKNLAEYGIPTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLTVEHTPSIPLVSKVPTIIVGMDVSHGSPGQFDVPSIAAVVSSRQWPLISRYRASVRTQSPKLEMIDSLYKRISDSQDDGIFRELLLDFYTSSGKRKPDQIIIFRDGVSESQFNQVLNIELNQMIEACKFLDEKWSPKFVVIIAQKNHHTKFFQSGSPDNVPPGTVIDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLYDEVGFSADDLQELVHSLSYVYQRSTTAVSVVAPICYAHLAATQMGQFIKFEEVSETSSSQGGLTSAGAVPVPQLPRLQEKVCNSMFFC 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3717719 3724316 + Bma025079.4 Bma07g00301 85438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00301 915 ProSiteProfiles PAZ domain profile. 323 399 IPR003100 GO:0005515
Bma07g00301 915 SUPERFAMILY PAZ domain 276 439 IPR036085 GO:0005515
Bma07g00301 915 CDD PAZ_argonaute_like 281 398 - -
Bma07g00301 915 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 914 - -
Bma07g00301 915 SMART DUF1785_2 229 281 IPR014811 -
Bma07g00301 915 Pfam PAZ domain 285 415 IPR003100 GO:0005515
Bma07g00301 915 Pfam Piwi domain 569 876 IPR003165 GO:0003676
Bma07g00301 915 SMART Piwi_a_2 568 876 IPR003165 GO:0003676
Bma07g00301 915 Pfam Mid domain of argonaute 479 530 IPR032473 -
Bma07g00301 915 Gene3D paz domain 275 403 - -
Bma07g00301 915 Pfam Argonaute linker 2 domain 425 470 IPR032472 -
Bma07g00301 915 Pfam Argonaute linker 1 domain 231 279 IPR014811 -
Bma07g00301 915 ProSiteProfiles Piwi domain profile. 568 876 IPR003165 GO:0003676
Bma07g00301 915 MobiDBLite consensus disorder prediction 1 21 - -
Bma07g00301 915 Pfam N-terminal domain of argonaute 58 219 IPR032474 -
Bma07g00301 915 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 914 - -
Bma07g00301 915 SUPERFAMILY Ribonuclease H-like 552 874 IPR012337 -
Bma07g00301 915 Gene3D - 635 915 IPR036397 GO:0003676
Bma07g00301 915 MobiDBLite consensus disorder prediction 149 175 - -
Bma07g00301 915 CDD Piwi_ago-like 443 870 IPR045246 -
Bma07g00301 915 Gene3D - 463 629 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00301 Bma14g00429 CCT
Bma07g00301 Bma14g00429 ECH
Bma07g00301 Bma11g00328 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00301 Bma-Chr7:3717719 Bma08g00120 Bma-Chr8:1483433 3.36E-160 dispersed
Bma03g01307 Bma-Chr3:25709937 Bma07g00301 Bma-Chr7:3717719 0 transposed
Bma11g00328 Bma-Chr11:3073852 Bma07g00301 Bma-Chr7:3717719 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00301 K11593 - csv:101220468 1574.68