Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00307 ATGGATCTCTTACAGTCTCAAAGGACGGAGATGATAGGTTTAGCCATAGCTCTTGCTGCCGTTGGTCTTGGCACTGCCTATTATTTCTATATCACCAAGAAACCCAAAGATTGTTTGGACCCTAATGATTTCAAGGAATTTAAGCTTGTCAAGCGCACCCAACTCAGCCACAATGTGGCTTGTTTCAGATTTGCTCTTCCTACCCCAAACTCAGTCTTGGGCCTTCCGATTGGACAACATATGAGTTGCAGAGGAAAAGATTGTCTTGGCGAAGAGGTTTGCAAACCATACACTCCAACGACTTTGGATTCAGATATTGGATACTTTGATTTGGTTATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGGGAGATGCGCGAAGGAGATTATTTGGCTGTAAAGGGACCTAAGGGTCGATTCAAGTATCAGCCAAACCAAGTAAGAGCTTTTGGCATGCTTGCCGGTGGCTCTGGGATCACTCCCATGTTCCAGGTACACAAAGTTGAACTAGTCATTTCGCAGAGTCTTATGACTGCTTCTTGTGTTAACTTTGTAACTCTGCAGGTGGCCAGAGGAATCCTGGAAAATCCAGTTGACAAGACGATTGTGCATCTTATATATGCTAATGTCAAGTATGAAGACATTCTTCTTAAAGAAGAATTAGGCCATCTCGTTAGCAGTTTTCCGGGCCGGATCACCGTGTATTACGTTCTGAATGAGCCTCCTCAAGAGTGGGACGGTGGCGTTGGGTTCATATCCAAGGAAATGATTCAAACATTTTGTCCTGCTCCCTCCCCTGATATTCAGATACTGCGGTGTGGGCCACCTCCGATGAACAAGGCCATGGCTGCCCACCTTCAAGAACTGGGATACAGCTCCCAAATGCAGTTCCAGTTTTAA 909 45.43 MDLLQSQRTEMIGLAIALAAVGLGTAYYFYITKKPKDCLDPNDFKEFKLVKRTQLSHNVACFRFALPTPNSVLGLPIGQHMSCRGKDCLGEEVCKPYTPTTLDSDIGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYQPNQVRAFGMLAGGSGITPMFQVHKVELVISQSLMTASCVNFVTLQVARGILENPVDKTIVHLIYANVKYEDILLKEELGHLVSSFPGRITVYYVLNEPPQEWDGGVGFISKEMIQTFCPAPSPDIQILRCGPPPMNKAMAAHLQELGYSSQMQFQF 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3744683 3747555 + Bma025085.2 Bma07g00307 85444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00307 302 Pfam Oxidoreductase NAD-binding domain 155 285 IPR001433 GO:0016491
Bma07g00307 302 Gene3D - 188 302 IPR039261 -
Bma07g00307 302 Gene3D Translation factors 35 139 - -
Bma07g00307 302 PANTHER NADH-CYTOCHROME B5 REDUCTASE 190 302 IPR001834 GO:0016491
Bma07g00307 302 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 171 IPR001834 GO:0016491
Bma07g00307 302 PRINTS Cytochrome B5 reductase signature 73 84 - -
Bma07g00307 302 PRINTS Cytochrome B5 reductase signature 95 102 - -
Bma07g00307 302 PRINTS Cytochrome B5 reductase signature 131 145 - -
Bma07g00307 302 PRINTS Cytochrome B5 reductase signature 154 173 - -
Bma07g00307 302 PRINTS Cytochrome B5 reductase signature 272 280 - -
Bma07g00307 302 PANTHER NADH-CYTOCHROME B5 REDUCTASE 190 302 - -
Bma07g00307 302 PANTHER NADH-CYTOCHROME B5 REDUCTASE 1 171 - -
Bma07g00307 302 CDD cyt_b5_reduct_like 47 302 - -
Bma07g00307 302 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Bma07g00307 302 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 139 298 IPR039261 -
Bma07g00307 302 SUPERFAMILY Riboflavin synthase domain-like 36 148 IPR017938 -
Bma07g00307 302 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00307 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - zju:107410364 457.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01430 Bma-Chr4:49302727 Bma07g00307 Bma-Chr7:3744683 1.70E-153 dispersed
Bma07g00307 Bma-Chr7:3744683 Bma11g00894 Bma-Chr11:33971462 2.10E-08 dispersed
Bma07g00307 Bma-Chr7:3744683 Bma10g00255 Bma-Chr10:2354021 2.96E-150 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00307 Bma_Chr07 FPKM 6.684746 7.392172 22.492687 22.946554 5.148566 4.950322 6.054507 7.988976 7.452249 7.103038