Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00317 ATGGCTGAAGTAATGGCTGCGAGGTACTGGTGCCACATATGTTCTCAAATTGTTATTCCAGTCCTAGAAGATGAGATCAAATGCCCCTTTTGCCAAAGTGGCTTTCTTGGCATGATGAGTAATCCGCGCCGGCGCCGCCAACTTAGGCAATTCCCCTTGTATGTGGATGGCAATACGAGTGGCCATGACAATGATGGTGTAGAAGAACGCAATGCAGCTGAGACAAGTGAATTAGACCTAGAATTTGAGTCCATTATGGGGAGGAGGAGAAATTCAGCTACTATGCTTCAAATGCTTCAAGGCATCCGGGGAGGAATGACTTCCAGATCAGAGAACGTAGAGGAAGACATGAATAGAGAAAGAGAGAGGCAAAGAGAGCGTGCCTTGCTAATCAACCTTTTTAACGATACCATTACTGTTAATGGAAATGACAGACAGAATGAAACAACCTTTGGATCTCTAGGTGATTATTTAGTTGGCCCTGGTTTGGATTTGTTGTTGCAACATTTGGCCGAGAACGATCCAAATAGATATGGAACTCCACCAGCTCAAAAGGAAGCCGTGGAAGCACTGCCCACAGTCATAATCAAGGAAAACTTGCAGTGTTGTGTGTGTTTGGATGATTTTGAGACAGGTACTGAAGTGAAGGAGTTACCCTGTAAGCATAAGTTTCATTGTGGATGTATAATGCCATGGTTGGAGCTCCATAGTTCTTGTCCAGTTTGTAGATATCAGTTGCCATTTGAGGAGCTAAAGGTTGGAGCCCAAAGGGAAAGCGAAATTGAGAGCCACAGTGCTCATATCCACGGCCATTCCCGTGACGAAGAGGTTGATGGGAGTGTAAGAGCGCCACCCAGTAGAAGATCTTTATTTCCATGGCCATTCACTGTTTTGTTTTCTTCATCTGGATCTCAATCTGGTGTTGGAAATGGAAGTAGAAGTCCAAGTAGTTCTCAATCAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTAATAACAAACTCGAATTTGGATCCGTTTTGGAAGGATAATCAATGA 2793 47.76 MAEVMAARYWCHICSQIVIPVLEDEIKCPFCQSGFLGMMSNPRRRRQLRQFPLYVDGNTSGHDNDGVEERNAAETSELDLEFESIMGRRRNSATMLQMLQGIRGGMTSRSENVEEDMNRERERQRERALLINLFNDTITVNGNDRQNETTFGSLGDYLVGPGLDLLLQHLAENDPNRYGTPPAQKEAVEALPTVIIKENLQCCVCLDDFETGTEVKELPCKHKFHCGCIMPWLELHSSCPVCRYQLPFEELKVGAQRESEIESHSAHIHGHSRDEEVDGSVRAPPSRRSLFPWPFTVLFSSSGSQSGVGNGSRSPSSSQSDERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERESLITNSNLDPFWKDNQ 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3806447 3809337 - Bma025096.1 Bma07g00317 85454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00317 930 CDD RING-H2_RNF126_like 201 243 - -
Bma07g00317 930 MobiDBLite consensus disorder prediction 301 317 - -
Bma07g00317 930 MobiDBLite consensus disorder prediction 259 283 - -
Bma07g00317 930 MobiDBLite consensus disorder prediction 301 326 - -
Bma07g00317 930 SMART ring_2 202 242 IPR001841 -
Bma07g00317 930 Pfam zinc-ribbon 8 36 IPR039525 GO:0061630
Bma07g00317 930 MobiDBLite consensus disorder prediction 355 917 - -
Bma07g00317 930 PANTHER CHASCON, ISOFORM D-RELATED 112 436 - -
Bma07g00317 930 PANTHER CHASCON, ISOFORM D-RELATED 809 914 - -
Bma07g00317 930 Coils Coil 323 913 - -
Bma07g00317 930 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 248 IPR013083 -
Bma07g00317 930 MobiDBLite consensus disorder prediction 355 930 - -
Bma07g00317 930 Pfam Ring finger domain 201 243 IPR001841 -
Bma07g00317 930 MobiDBLite consensus disorder prediction 259 282 - -
Bma07g00317 930 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Bma07g00317 930 SUPERFAMILY RING/U-box 191 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00317 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - vvi:100250148 327.405
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00317 Bma11g00345 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00317 Bma-Chr7:3806447 Bma11g00192 Bma-Chr11:1717751 1.86E-146 dispersed
Bma12g01260 Bma-Chr12:45646726 Bma07g00317 Bma-Chr7:3806447 1.92E-42 dispersed
Bma08g00169 Bma-Chr8:2071303 Bma07g00317 Bma-Chr7:3806447 4.72E-11 transposed
Bma14g01646 Bma-Chr14:34823291 Bma07g00317 Bma-Chr7:3806447 3.61E-26 transposed
Bma11g00345 Bma-Chr11:3389968 Bma07g00317 Bma-Chr7:3806447 2.57E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00317 Bma_Chr07 FPKM 8.891596 9.170259 11.959377 11.259953 10.318033 10.099906 11.150995 19.127148 18.864223 22.016344