Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00325 ATGGGGTCGCCGGAAAATTCCAGTTGGGTATTTGATTACAGTTTGATAGAGGACATTTCTGTGCCTGGTGGTGATCTTCCTTCGCTTGACCCTCCTCCATCTTTCACTTGGCCTTCTCACTCGTTTACCTCTCCTCTAAGTGTGGAATTTGATGAGTCGTTTGGTAATTCAGATGGATACAAGGAAATAGACTCCCGGAAAAGGATACGCTCTGGATCGTGCAGCGCGTCTAGTACCAAAGCGTGTAAAGAGAAAATTCGAAGGGATAGATTAAATGACAGGTTTTTGGAGTTGAGCTCCATATTGGAGCCTGGAAGGACTCCCAAAATGGACAAGACTGTTGTTTTGAGTGATGCCGTTCGAATGATCAGTCAGCTACGTGAAGAAGCCCGGAAACTGAAGGAATTGAAAGAGAGTTTGCAGGAAAATATAAACGAGCTTAAGGCCGAGAAGAACGAGCTTCGTGATGAGAAGCAGAGGTTAAAGGCTGAGAAAGAGAATCTAGAGCGACAAGTGAATAATGTCTGTGCACAGCCAAGCTTTCTGTCTCCCCCACCTGCTATTCCAGCTGCATTGTCTGCTCCAAGTCAAGTTTCTGGCAAACTCGTGCCGCTGATTGGGTATCCCGGGCTATCGATGTGGCAGTTTATGCCTCCGGCTTCAGTTGATACCTCTCAAGACCATGTTCTCCGCCCGCCTGTTGCCTAA 708 47.18 MGSPENSSWVFDYSLIEDISVPGGDLPSLDPPPSFTWPSHSFTSPLSVEFDESFGNSDGYKEIDSRKRIRSGSCSASSTKACKEKIRRDRLNDRFLELSSILEPGRTPKMDKTVVLSDAVRMISQLREEARKLKELKESLQENINELKAEKNELRDEKQRLKAEKENLERQVNNVCAQPSFLSPPPAIPAALSAPSQVSGKLVPLIGYPGLSMWQFMPPASVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4200370 4201806 - Bma025105.1 Bma07g00325 85462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00325 235 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 235 - -
Bma07g00325 235 CDD bHLH_AtILR3_like 80 155 - -
Bma07g00325 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Bma07g00325 235 Coils Coil 116 178 - -
Bma07g00325 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983
Bma07g00325 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Bma07g00325 235 PANTHER BHLH TRANSCRIPTION FACTOR 3 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bma07g00325 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 154 IPR036638 GO:0046983
Bma07g00325 235 Gene3D - 66 124 IPR036638 GO:0046983
Bma07g00325 235 SMART finulus 81 132 IPR011598 GO:0046983
Bma07g00325 235 CDD bZIP 141 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01337 Bma-Chr2:55860529 Bma07g00325 Bma-Chr7:4200370 2.82E-38 dispersed
Bma06g01596 Bma-Chr6:52160053 Bma07g00325 Bma-Chr7:4200370 2.19E-24 dispersed
Bma07g00325 Bma-Chr7:4200370 Bma13g01026 Bma-Chr13:42866561 1.50E-94 dispersed
Bma07g00325 Bma-Chr7:4200370 Bma07g00327 Bma-Chr7:4272573 2.32E-167 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57590 PF00010 HLH 3.60E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00325 - - mnt:21402686 318.931