Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00327 ATGGGGTCGCCGGAAAACTCCAATTGGGTATTTGATTACAGTTTGATAGAGGACATTTCTGTGCCTGGTGGTGATCTTCCTCCGCTTGACCCTCCTCCATCTTTCACTTGGCCTTCTCACTCGTTTACCTCTCCTCTCAGTGTGGAATTTGATGAGTCGTTTGGTAATTCAGATGGATACAAGGAAATAGACTCCCGGAAAAGGATACGCTCTGGATCGTGCAGCGCGTCTAGTACCAAAGCGTGTAAAGAGAAAATTCCAAGGGATAGATTAAATGACAGGTTTTTGGAGTTGAGCTCCATATTGGAGCCGGGAAGAACTCCCAAAATGGACAAGACTGTTGTTTTGAGTGATGCCGTTCGAATGATCAGTCAGCTACGCGAAGAAGCCCGGAAACTGAAGGAATTGAAAGAGAGTTTGCAGGAAAATATAAACGAGCTTAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGTTAAAGGCTGAGAAAGAGAATCTAGAGCGACAAGTGAATAATGTCTGTGCTCAGCCAAGCTTTCTGTCTCCCCCACCTGCTATTCCCGCTGCATTGTCTGCTCCAAGTCAAGTTTCTGGCAAACTCGTGCCGCTGATTGGGTATCCCGGGCTATCGATATGGCAGTTTATGCCTCCGGCTTCGGTTGATACCTCTCAAGACCATGTTCTTTGCCCGCTGGTTGCCTAA 708 47.6 MGSPENSNWVFDYSLIEDISVPGGDLPPLDPPPSFTWPSHSFTSPLSVEFDESFGNSDGYKEIDSRKRIRSGSCSASSTKACKEKIPRDRLNDRFLELSSILEPGRTPKMDKTVVLSDAVRMISQLREEARKLKELKESLQENINELKAEKNELRDEKQRLKAEKENLERQVNNVCAQPSFLSPPPAIPAALSAPSQVSGKLVPLIGYPGLSIWQFMPPASVDTSQDHVLCPLVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4272573 4274015 - Bma025108.2 Bma07g00327 85464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00327 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Bma07g00327 235 CDD bHLH_AtILR3_like 80 155 - -
Bma07g00327 235 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 235 - -
Bma07g00327 235 Coils Coil 116 178 - -
Bma07g00327 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Bma07g00327 235 SMART finulus 81 132 IPR011598 GO:0046983
Bma07g00327 235 PANTHER BHLH TRANSCRIPTION FACTOR 3 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bma07g00327 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 154 IPR036638 GO:0046983
Bma07g00327 235 Gene3D - 73 124 IPR036638 GO:0046983
Bma07g00327 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00327 Bma-Chr7:4272573 Bma13g01026 Bma-Chr13:42866561 1.29E-90 dispersed
Bma07g00325 Bma-Chr7:4200370 Bma07g00327 Bma-Chr7:4272573 2.32E-167 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57591 PF00010 HLH 2.20E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00327 - - mnt:21402686 300.441