Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00328 ATGGCTAGTCGCAACCAGAACAGGCCTCCTCGCAGTCCCTCCCCGGTTAGAAATAAAAAAGATGGAATCGATCAAGTTCCATTAGACAAACGAAGGAAGATTGGATTGGGAAGATTGACTGGACCTCCGGCTATTGGACGTGCGAGACAGGCTTTTTCTGTGGTTAGTAATAGAGAAGAACCAGCGGTTGGGAGTGATGCTGGAACAAACGAGGGATCAGAGTGTGGTAATGTTGAATTCACCAATGAAGAGGTTGATGCATTACTAAACGAGAAGTTTAAGGGAAAGAAGTTTGATTTCAAGGGGAAATTTGAGCAAGTTACTGAGCACAGTAAACGGCTCAAGCTCTGCATCAAGTGGTTTCAACAAGCCAAAGAAACCCAACAGCTTGAGGAGGAGAAGTTACGAAATGCTTTAGAGTCTGCTGAGGAAAAATGCACTAAAACTAACTTGGAGATGAGGAATAGAATACAAGAGTTCACTTCCAGTATTTTGGAATTGCAAAAAACTATTGGATCATTGGAAGAGAAACTTGCAAAGGAGGAATCAGATAAATTGAGTGCACTTGAGTGCCATAGAAGAGAAAAAGAAGCAAGACTTGGAGCCGAAAAGTTGCAAGCTTCTCTCTCAGAGGATCTTGAGAAGATTCGGCAAGAAAAATGTGCTGCAGAGAAGAGGGTTGCATCAAATGAAGATTTGTATAAACGAGCTCAAGAGTACAACATCAGCTTGCAACAGTACAATAGCAAACTTCAAGCTGACCTTGATACAACAAACGAGTCATTGAAAAGGGTGGAAATGGAAAAATTAGCGATTGTAGACAATCTCAGTAATTTAAGAGGACACAACAAAATATTGCAAGAACAATTATCCTCTTTCAAAGCTTTACAAGAGGAGGCAGTTAAGCAGAAAGAAGCGTCAATAAAAGAACTCAAATGCGTCCAAGGAGAAGTACAACATCTGAGAAATGATCGAGACCATCAAGTGGCTCAGGTTCAAGCTTTAAGAGCTGATATAATGATGTATCAAGAACGTACTGGTAAGTCACTTGCAGAGTTGGAAAGCGTGGTGATAAAATCAGATGCATTGCAGGAAACTTGTTCTTCTCAAAAGCAGCGAATATGCTTGTTGGAGCAGCAGTTAGCCTCTGCAAAAGAGAAAATAAAACTTGTTGATTTATCTGCATCAGAATTAAAGACAGAATATGAGCAACAGAAGAACATAATTTGCGAATTACAAAATCAAATTGCGGATTTTGAGTTCCAAGTAATTGAAGGAGAAAAATTGAGGAAAAGCCTACACAATACCATCCTGGAGCTAAAAGGAAATATTCGTGTATTTTGTCGAGTGCGCCCGTTGCTACCAGATGATGGAATTGGAGCAGAAAGCACAGCCGTCTCTTATCCAACATCAGTTGAAACATTGGGTCGGGGCGTAGATTTGATGCAAAGTGGACAAAAATATCCTTTTACATTTGATCAAGTGTTTACTCATGAGGCATCCCAACAGGATGTTTTCGTAGAAATCTCTCAACTTGTGCAGAGTGCACTTGATGGGTATAAGGTGTGCATATTTGCATATGGACAAACTGGATCAGGTAAAACTTATACTATGATGGGCAAGCCTGAGCAAAAGGGGTTGATTCCACGGTCATTAGAACAAATATTTCAAAGTAGTCAGTCACTTGAAACTCAAGGGTGGAAATATCAAATGCAGGCATCTATGTTAGAGATTTACAACGAGACAATCCGTGATTTATTGTCACCAAAAGGGCCGTGTGGGGAAGCAAGGACGGATGTCAATGCTCTCGTGAAGCAATACACCATTAAACATGATGCAAATGGAAATACCTATGTTTCAGATCTTACTATTGTTGACGTATGTAGCATTCGAGAGGTCTCATCTCTCTTGCAACAGGCTGCAAACAGTAGGTCTGTGGGCAAGACTCAAATGAACGAGCAGTCATCTAGAAGTCACTTCGTATTTACATTGCGTATAACAGGAATAAACGAGAGTACCGAGCAGCAAGTGCAAGGGGTGCTAAACCTCATCGACCTTGCGGGAAGTGAACGACTCTCCAGAAGTGGGGCGACAGGGGACAGATTAAAGGAAACACAGGCCATAAATAAAAGTCTATCATCGTTGGGGGATGTAATATTTGCACTAGCCAAGAAGGAAGATCACATTCCTTATCGAAACTCAAAACTGACGTATCTTCTCCAGCCATGTCTAGGAGGCGATTCGAAAAGTTTAATGATCGTGAACGTTTCCCCGGACCAATCGTCTGCGGCCGAGACCCTTTGCTCCCTTCGATTTGCTGCAAGAGTGAATGCTTGCGAAATAGGAGTGCCTCGACGCCAAACATCCGTGCGTCCCTGA 2379 41.95 MASRNQNRPPRSPSPVRNKKDGIDQVPLDKRRKIGLGRLTGPPAIGRARQAFSVVSNREEPAVGSDAGTNEGSECGNVEFTNEEVDALLNEKFKGKKFDFKGKFEQVTEHSKRLKLCIKWFQQAKETQQLEEEKLRNALESAEEKCTKTNLEMRNRIQEFTSSILELQKTIGSLEEKLAKEESDKLSALECHRREKEARLGAEKLQASLSEDLEKIRQEKCAAEKRVASNEDLYKRAQEYNISLQQYNSKLQADLDTTNESLKRVEMEKLAIVDNLSNLRGHNKILQEQLSSFKALQEEAVKQKEASIKELKCVQGEVQHLRNDRDHQVAQVQALRADIMMYQERTGKSLAELESVVIKSDALQETCSSQKQRICLLEQQLASAKEKIKLVDLSASELKTEYEQQKNIICELQNQIADFEFQVIEGEKLRKSLHNTILELKGNIRVFCRVRPLLPDDGIGAESTAVSYPTSVETLGRGVDLMQSGQKYPFTFDQVFTHEASQQDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEQKGLIPRSLEQIFQSSQSLETQGWKYQMQASMLEIYNETIRDLLSPKGPCGEARTDVNALVKQYTIKHDANGNTYVSDLTIVDVCSIREVSSLLQQAANSRSVGKTQMNEQSSRSHFVFTLRITGINESTEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLGDVIFALAKKEDHIPYRNSKLTYLLQPCLGGDSKSLMIVNVSPDQSSAAETLCSLRFAARVNACEIGVPRRQTSVRP 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4274710 4282003 - Bma025109.1 Bma07g00328 85465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00328 792 CDD KISc_C_terminal 441 781 - -
Bma07g00328 792 Coils Coil 125 199 - -
Bma07g00328 792 PANTHER KINESIN-LIKE PROTEIN 3 791 - -
Bma07g00328 792 MobiDBLite consensus disorder prediction 14 36 - -
Bma07g00328 792 Gene3D Kinesin motor domain 384 781 IPR036961 -
Bma07g00328 792 ProSiteProfiles Kinesin motor domain profile. 443 779 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma07g00328 792 PANTHER KINESIN-LIKE PROTEIN KLP-3 3 791 - -
Bma07g00328 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 777 IPR027417 -
Bma07g00328 792 ProSitePatterns Kinesin motor domain signature. 679 690 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bma07g00328 792 Pfam Kinesin motor domain 449 777 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma07g00328 792 Coils Coil 230 268 - -
Bma07g00328 792 PRINTS Kinesin heavy chain signature 729 750 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma07g00328 792 PRINTS Kinesin heavy chain signature 680 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma07g00328 792 PRINTS Kinesin heavy chain signature 649 666 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma07g00328 792 PRINTS Kinesin heavy chain signature 519 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma07g00328 792 MobiDBLite consensus disorder prediction 1 44 - -
Bma07g00328 792 MobiDBLite consensus disorder prediction 56 76 - -
Bma07g00328 792 SMART kinesin_4 441 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00328 K10405 KIFC1; kinesin family member C1 - jre:109011553 1146.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00328 Bma14g00742 CCT
Bma07g01371 Bma07g00328 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00766 Bma-Chr2:39716341 Bma07g00328 Bma-Chr7:4274710 8.70E-33 dispersed
Bma05g00319 Bma-Chr5:10040114 Bma07g00328 Bma-Chr7:4274710 1.46E-40 dispersed
Bma07g00328 Bma-Chr7:4274710 Bma14g00358 Bma-Chr14:4359583 0 dispersed
Bma09g00443 Bma-Chr9:38321933 Bma07g00328 Bma-Chr7:4274710 5.49E-68 dispersed
Bma15g00774 Bma-Chr15:16369849 Bma07g00328 Bma-Chr7:4274710 1.20E-69 dispersed
Bma07g00328 Bma-Chr7:4274710 Bma05g00820 Bma-Chr5:45530211 5.83E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g5 . Blo03g01398 . . . . Bma14g00742 Bma07g01371 Cmo10g00829 Cmo11g00777 Cma10g00802 . . . . . Cpe18g00278 Bhi02g01439 Tan09g0742 . . . . . . . . . . . . . Cone5ag1410 . . Lsi06g00378 . . . . . Bda07g00772 Bda09g00340 . Bpe11g00947 Bma07g00328 . . . . Cma11g00768 . . . . Cpe04g00992 . . . . . . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . Csa01g03033 Chy02g01313 Cme02g00345
Vvi6g6 . . . . . . . . Cmo10g01101 . Cma10g01045 . . . . . Cpe18g00084 . . . . . . . . . . . . . . . . . . . . . . . Blo14g00340 . . Bpe08g00334 . Bma07g00328 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006216 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00328 Bma_Chr07 FPKM 1.204461 2.577524 10.280228 9.484273 20.343828 21.078644 18.590784 7.31193 6.374101 6.453801