Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00336 ATGGCGATTCAGGTGCCGCATGATTTCAAGTGTCCGATTTCGCTGGAGATAATGACTGACCCGGTTATACTTTCATCGGGTCATACCTTTGATCGCGCCTCTATCCAACGGTGGCTCGACGATGGCCACCGGAATTGTCCTATCACTCTTCTTCCCCTCCCTCAATGTCCTACGCTCATCCCCAATCACGCTCTCAGAAGCTTAATTTCAAACTATACTACCCTCTCGCTTCCCAAACAGCCATCTCGTCCCGAGCCCCAATCCCTAATCTCCGTCCTAACTGCCCCGTCTTCTTCAGTGCAAGCCAAACTCGATTCGCTGACCCAGCTAGCACGGTTGTCGAAGCGCGACTCTGTGTTTCGTAGAAAGTTGATGGAGTCGGGTGTCGTCTCGCCGGTTCTTAAATGTGCGGGCTCCTGCGATGTAGGTCTACTAGAGAAAGCGCTCGCGTTATTCCTGAATCTTAGTTTAGACGACGATAACAAAGTGGGTTTGGTTGCAGAAGGTGCAATTGGGTTTATCGTCGCTGCTTTACGCGGTGGCTCGTCGGATTGCCGAGCTGTAGCAGCGACGATTCTGACAAGCTTGGCAGTCGTGGAGGTCAATAAGGTCACAATTGGAGAATACCCACATGCAGTTCGAGCTTTGGTTTCCCTTCTACGTGAAGGTAGAGGCCGGGAGAAGAAAGAAGCGGCGACGGCACTTTATGCCATCTGTTCATTCCCGGAGAATCGGCTGCGAGCGCTGGGATGTGGTGCTGTCCCGATTCTGATTCGAATTGCGGATTCTGGTCTTGAAAGGGCGATCGAAGTTTTGAGCCATTTAGCAAAATGCAAGGAAGGCCGAGAAGAGATGCAGAGATTGGAGGGATGCTTGAAAATCTTCGTGCGGGTGTTGAGAAATGGAAGTTCAAGAGGAGTTCAATATGCTCTTCTAACTCTAACTTCTATCTGTTGTCATTGCGATGGAATGTGTTTGGAAGCTAGGAGAGAAGGAGCTTTAGATATGGCCATGGCTCTAGTTGACGATGACAACGACAAAATCAGGAGAAATGCTTCAAATTTAATCCGGGTTTTGCAAGAGAGCCATTTTACGAGGTAA 1101 49.5 MAIQVPHDFKCPISLEIMTDPVILSSGHTFDRASIQRWLDDGHRNCPITLLPLPQCPTLIPNHALRSLISNYTTLSLPKQPSRPEPQSLISVLTAPSSSVQAKLDSLTQLARLSKRDSVFRRKLMESGVVSPVLKCAGSCDVGLLEKALALFLNLSLDDDNKVGLVAEGAIGFIVAALRGGSSDCRAVAATILTSLAVVEVNKVTIGEYPHAVRALVSLLREGRGREKKEAATALYAICSFPENRLRALGCGAVPILIRIADSGLERAIEVLSHLAKCKEGREEMQRLEGCLKIFVRVLRNGSSRGVQYALLTLTSICCHCDGMCLEARREGALDMAMALVDDDNDKIRRNASNLIRVLQESHFTR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4319911 4321011 - Bma025116.1 Bma07g00336 85473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00336 366 PANTHER U BOX DOMAIN-CONTAINING 1 360 - -
Bma07g00336 366 Gene3D - 267 363 IPR011989 -
Bma07g00336 366 Gene3D - 85 266 IPR011989 -
Bma07g00336 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Bma07g00336 366 Pfam U-box domain 5 73 IPR003613 GO:0004842|GO:0016567
Bma07g00336 366 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 360 - -
Bma07g00336 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bma07g00336 366 SUPERFAMILY ARM repeat 88 359 IPR016024 -
Bma07g00336 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Bma07g00336 366 SUPERFAMILY RING/U-box 3 73 - -
Bma07g00336 366 SMART arm_5 158 198 IPR000225 GO:0005515
Bma07g00336 366 SMART arm_5 117 157 IPR000225 GO:0005515
Bma07g00336 366 SMART arm_5 241 277 IPR000225 GO:0005515
Bma07g00336 366 SMART arm_5 321 361 IPR000225 GO:0005515
Bma07g00336 366 SMART arm_5 278 319 IPR000225 GO:0005515
Bma07g00336 366 CDD RING-Ubox_PUB 9 49 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00336 Bma-Chr7:4319911 Bma11g00122 Bma-Chr11:1154400 1.42E-55 dispersed
Bma11g00359 Bma-Chr11:3882473 Bma07g00336 Bma-Chr7:4319911 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00336 - - zju:107421885 521.161