Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00353 CAAAACTCGGCCAAGATGAACGATCTGTTCTCTAACTCTTTCAAAAAATACGCCGACCTGAAGCAGCAGGCGTACGAAGACGGAATGGAGGCAGGAAACGAGACTGTAAATCTCGATAAATTCTTTGAAGACGTTGAGAATGTGAAGGAAGACATGAAAGAGGTGGAAAAGCTCTACAAGAAACTACAAGAAGCAAATGAAGAAAGCAAAGTAGTCCACAACGCCAAAACCATGAAAGAATTGAGAGCAAGAATGGATCAAGATGTCAGCCAGGTCTTAAGAAGAGTCAAAGTGATCAAAGGAAAGCTCGAAGCTCTCGATCGATCGAACGCGTCTCATCGGAGCCTTCCCGGGTGCGGTCCCGGCTCGTCTGCCGATAGAACAAGAACCTCAGTGGTGAGTGGATTGGGAAAGAAACTTAAAGACACCATGGATGATTTTCAGAGCTTAAGAGCTAGAATGAATGCAGAATACAAGGAAACAGTAGAACGCAGGTATTTCACAATCACAGGAGAGAAGGCAAATGAAGAAACAATTGAGACTCTGATATCTAGCGGAGAAAGCGAAAATTTTCTGCAGAAAGCAATTCAAGAACAGGGTAGAGGCCAAATAATGGACACAATATCAGAAATACAAGAAAGGCACGATGCAGTGAAGGAGATAGAGAAGAACCTGATTGAGCTGCACCAGATATTTCTGGACATGGCTGCACTTGTGGAGGCGCAGGGGCATCAGCTTAACGACATAGAGAGTCACGTTGCACATGCTAATTCGTTTGTCCGGCGAGGCACTGAGCAACTGCAGGAGGCCAGAGAACAGCAGAAAAGTTCGAGGAAATGGACGTGCATTGCTGTAATTCTCGGCGCCGTTCTCGTTGCCGTTCTGCTCTTCCCGCTTTTGACGTCGATTTTGCCCCACTTGATGTAG 927 45.95 QNSAKMNDLFSNSFKKYADLKQQAYEDGMEAGNETVNLDKFFEDVENVKEDMKEVEKLYKKLQEANEESKVVHNAKTMKELRARMDQDVSQVLRRVKVIKGKLEALDRSNASHRSLPGCGPGSSADRTRTSVVSGLGKKLKDTMDDFQSLRARMNAEYKETVERRYFTITGEKANEETIETLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREQQKSSRKWTCIAVILGAVLVAVLLFPLLTSILPHLM 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4463222 4464148 + Bma025134.1 Bma07g00353 85490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00353 308 PANTHER SYNTAXIN 12 300 IPR045242 -
Bma07g00353 308 CDD SynN 38 195 IPR006011 GO:0016020
Bma07g00353 308 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma07g00353 308 SMART tSNARE_6 203 270 IPR000727 -
Bma07g00353 308 Gene3D - 38 165 - -
Bma07g00353 308 CDD SNARE_syntaxin1-like 207 269 - -
Bma07g00353 308 MobiDBLite consensus disorder prediction 111 132 - -
Bma07g00353 308 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Bma07g00353 308 Coils Coil 38 75 - -
Bma07g00353 308 Pfam SNARE domain 245 296 IPR000727 -
Bma07g00353 308 SMART SynN_4 33 159 IPR006011 GO:0016020
Bma07g00353 308 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Bma07g00353 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Bma07g00353 308 Gene3D - 198 300 - -
Bma07g00353 308 PANTHER T-SNARE-RELATED 12 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02014 Bma-Chr1:74718270 Bma07g00353 Bma-Chr7:4463222 2.74E-65 dispersed
Bma04g00526 Bma-Chr4:4618116 Bma07g00353 Bma-Chr7:4463222 5.98E-127 dispersed
Bma04g01535 Bma-Chr4:51364686 Bma07g00353 Bma-Chr7:4463222 7.78E-116 dispersed
Bma07g00353 Bma-Chr7:4463222 Bma10g00132 Bma-Chr10:1190775 3.53E-124 dispersed
Bma10g00004 Bma-Chr10:154588 Bma07g00353 Bma-Chr7:4463222 3.00E-95 transposed
Bma12g00507 Bma-Chr12:16198148 Bma07g00353 Bma-Chr7:4463222 2.38E-68 transposed
Bma11g00374 Bma-Chr11:4077034 Bma07g00353 Bma-Chr7:4463222 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00353 K08486 - csv:101217140 525.013