Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00399 ATGGGTGGTCTGATCGATCTGAACACGGCCGACGACGATGACACTCCATCTTTTGGTGGTTCCCCTGCTTCGTCTTCATCTTCTTCTGGTTCTTCTTCTTCTTCGGCTTCTATTTGCTTGGAGTTATGGCACGCCTGCGCAGGTCCAGTTATTTCACTGCCGAAGAAAGGCAGTGTGGTCGTGTATTTGCCGCAAGCTCACTTGGAAATGGTCCAAGATTTTCCCATTACCGCCATTGATCTCCCTCCTCACATCTTCTGTCGTGTTCTCGATGTTCAACTCCATGCAGAGGTGGGTACTGACGAGGTTTACGCTCGAGTTTCTCTAATTCCTGAAAGTCAGAACTTTGAGCAGAAACTGCAAGAAGGGGAAATCGATGCCGCTGGTAGCGAAGACGATTTCGAAGTGGCAGTGAAGTCGACAACGCCTCATATGTTCTGCAAGACTCTCACTGCTTCAGACACCAGCACTCACGGCGGGTTCTCTGTCCCTCGCCGAGCCGCCGAAGATTGCTTTCCTGCGTTGGACTATAATCAACAGAGGCCTTCACAAGAGCTCATGGCGAAGGATCTTCACGGGTTGGAATGGCGGTTCCGACACATTTATCGAGCAGGGCAGCCAAGAAGACATTTGCTCACTTCTGGATGGAGTGCATTTGTAAACAAGAAAAAGCTGACCTCCGGCGATGCAGTCCTATTCCTCAGGGGCGAAGATGGTGACTTGAGACTCGGAATTAGAAGAGCATCTCATGTCAAAACCGGGTCTCCTCTTCCCGGTTTGTGCAGCCAGCAGCCAAGCCCCTGCAATCTTCGAAATATCATCGATTCTATATCGAAGACAATTGTATTCAGTGTCCGATGCAATCCAAGGACCGGTTTGTCGGAGTTCATCATACCTCTGCCTAGATTTTTGAAGAGCATTAACCAATCTTTCTCCATCGGGACGAGGTTTAAGCTGTGTTTCGAGACAGAGGATGCTGCAGAACGAAGGAGAAATGTTGTATTGGAATATTGCATGAACGAGTCGATTTTCATTCTTTGCAGATGCACAGGTCGAGTAACCGGAATTAGCGACGTGGATCCAATGAGATGGCCCGGCTCTAAGTGGAGATGTTTAGTGGTGAGGTGGGACGGAGCGGAAACTAATAGACATGGCAGGGTTTCTCCATGGGAGATCGAGCCATCCGGTTCTCCTTGTGAATCGAACAGCTTGGTCATACCTGGTTTGAAGAGGACCAGGATCAAATTGTCTTCGGACAAAACCGAGTTTCCGATTCCTAATGGGATTGGGCAATCGGACTTTGAGGAATCTCTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCGGGTTTTGATCTTTCGTTCGATGGTTTACGAAATAAAAATCAACGACCGTGCGAAAGAAGGATGTTTTCTTCTCAAAGCATAGGCATTCCGGAGTCTCATGGATTCCCGAAGCTCTTGCAAGGTCAAGAAATATTTTCTAGCCGTCCATACCGAACAACCGCACCGACTCCCGACGAGGCTCGAGATAACGGTGGACAATTAATCTTCAATGGTGTTCGAGTTCCTAACTTTAAACACGGATGGCCTCTCTCCATGCATGGCTCGAATTCGGACAAGCGAGTATCGTCTTCGACTGCGCAGGTGTCTTCGCCATCTTCCGTGTTGATGTTTCAACAAGCAATCAATCTAGCTCCAGCCTATAGTTCAGTCTACAACAATGGTAAAACTTCTCACTTGACAAATGGTGTAAAGTTATCGTCTTTCTCCGGCAGTCGATTAAGAAAAGCAGTCCAGTCGGAGGTCAATGATCAACTAGCTCAACCCGCATCGAGTTTCAGCGGAAATCTGAGCAAAACGAACTGCAGGCTATTCGGGTTTTCGTTAACAGAGGAAAAGCAGGTTTCCCAAATGGAGAAGGCCTTCAATGCCATCCAAAACCTCCATTGA 1956 47.9 MGGLIDLNTADDDDTPSFGGSPASSSSSSGSSSSSASICLELWHACAGPVISLPKKGSVVVYLPQAHLEMVQDFPITAIDLPPHIFCRVLDVQLHAEVGTDEVYARVSLIPESQNFEQKLQEGEIDAAGSEDDFEVAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPALDYNQQRPSQELMAKDLHGLEWRFRHIYRAGQPRRHLLTSGWSAFVNKKKLTSGDAVLFLRGEDGDLRLGIRRASHVKTGSPLPGLCSQQPSPCNLRNIIDSISKTIVFSVRCNPRTGLSEFIIPLPRFLKSINQSFSIGTRFKLCFETEDAAERRRNVVLEYCMNESIFILCRCTGRVTGISDVDPMRWPGSKWRCLVVRWDGAETNRHGRVSPWEIEPSGSPCESNSLVIPGLKRTRIKLSSDKTEFPIPNGIGQSDFEESLRFQKVLQGQEISGFDLSFDGLRNKNQRPCERRMFSSQSIGIPESHGFPKLLQGQEIFSSRPYRTTAPTPDEARDNGGQLIFNGVRVPNFKHGWPLSMHGSNSDKRVSSSTAQVSSPSSVLMFQQAINLAPAYSSVYNNGKTSHLTNGVKLSSFSGSRLRKAVQSEVNDQLAQPASSFSGNLSKTNCRLFGFSLTEEKQVSQMEKAFNAIQNLH 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4889574 4892659 - Bma025185.1 Bma07g00399 85536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00399 651 Pfam B3 DNA binding domain 146 248 IPR003340 GO:0003677
Bma07g00399 651 SMART B3_2 146 249 IPR003340 GO:0003677
Bma07g00399 651 CDD B3_DNA 144 247 IPR003340 GO:0003677
Bma07g00399 651 Gene3D - 144 248 IPR015300 -
Bma07g00399 651 Pfam Auxin response factor 276 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma07g00399 651 MobiDBLite consensus disorder prediction 1 31 - -
Bma07g00399 651 MobiDBLite consensus disorder prediction 14 31 - -
Bma07g00399 651 SUPERFAMILY DNA-binding pseudobarrel domain 139 253 IPR015300 -
Bma07g00399 651 PANTHER AUXIN RESPONSE FACTOR 3 30 642 - -
Bma07g00399 651 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 642 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma07g00399 651 Gene3D - 310 401 - -
Bma07g00399 651 ProSiteProfiles B3 DNA-binding domain profile. 146 249 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma07g00399 Bma14g01118 CCT
Bma07g00399 Bma11g00426 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00399 Bma-Chr7:4889574 Bma14g01118 Bma-Chr14:14107748 1.80E-96 dispersed
Bma07g00399 Bma-Chr7:4889574 Bma07g00402 Bma-Chr7:4917151 0 proximal
Bma11g00426 Bma-Chr11:4591491 Bma07g00399 Bma-Chr7:4889574 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57602 PF02362 B3 6.20E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00399 K14486 - zju:107412017 728.013