Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00402 ATGGGTGGTCTGATCGATCTGAACACGGCCGACGACGATGACACTCCATCTTTTGGTGGTTCCCCTGCTTCGTCTTCATCTTCTTCTGGTTCTTCTTCTTCTTCGGCTTCTATTTGCTTGGAGTTATGGCACGCCTGCGCAGGTCCAGTTATTTCACTGCCGAAGAAAGGCAGTGTGGTCGTGTATTTGCCGCAAGCTCACTTGGAAATGGTCCAAGATTTTCCCATTACCGCCATTGATCTCCCTCCTCACATCTTCTGTCGTGTTCTCGATGTTCAACTCCATGCAGAGGTGGGTACTGACGAGGTTTACGCTCGAGTTTCTCTAATTCCTGAAAGTCAGAACTTTGAGCAGAAACTGCAAGAAGGGGAAATCGATGCCGCTGGTAGCGAAGACGATTTCGAAGTGGCAGTGAAGTCCACAACGCCTCATATGTTCTGCAAGACTCTCACTGCTTCAGACACCAGCACTCACGGCGGGTTCTCTGTCCCTCGCCGAGCCGCCGAAGATTGCTTTCCTGCGTTGGACTATAATCAACAGAGGCCTTCACAAGAGCTCATGGCGAAGGATCTTCACGGGTTGGAATGGCGGTTCCGACACATTTATCGAGCAGGGCAGCCAAGAAGACATTTGCTCACTTCTGGATGGAGTGCATTTGTAAACAAGAAAAAGCTGACCTCCGGCGACGCAGTCCTATTTCTCAGGGGCGAAGATGGTGACTTGAGACTCGGAATTAGAAGAGCATCTCAGGTCAAAACCGGGTCTCCTCTTCCCGGTTTGTGCAGCCAGCAGCCAAGCCCCTGCAATCTTCGAAATATCATCGATTCTATATCGAAGACAATTGTATTCAGTGTCCGATGCAATCCAAGGACCGGTTTGTCGGAGTTCATCATACCTCTGCCTAGATTTTTGAAGAGCATTAACCAATCTTTCTCCATCGGGACGAGGTTTAAGCTGTGTTTCGAGACAGAGGATGCTGGAGAACGAAGATGCACAGGTCGAGTAACCGGAATTAGCGATGTGGATCCAATGAGATGGCCCGGCTCTAAGTGGAGATGTTTAGTGGTGAGGTGGGACGGAGCGGAAACTAATAGACATGGCAGGGTTTCTCCATGGGAAATCGAGCCATCCGGTTCTCCTTGTGAATCGAACGGCTTGGTCATGCCTGGTTTGAAGAGGACCAGGATCAAATTGTCTTCGGACAAAACCGAGTTTCCGATTCCTAATGGGATTGGACAATCGGACTTTGATGAATCTCTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCGGGTTTTGATCTTTCGTTCGATGGTTTACGAAATAAAAATCAACGACCATGCGAAAGAAGGATGTTTTCTTCTCAAAGCATAGGCATTCCGGAGTCTCATGGATTCCCGAACCTCTTGCAAGGTCAAGAAATATTTTCAAGCCGTCCATACCGAACAACCGCACCAACTCCCGACGAGGCTCGAGATAACGGTGGACAATTAATCTTCAATGGTGTTCGAGTTCCTAACTTTAAACACGGATGGCCTCTCTCGATGCATGGTTCGAATTCGGACAAGCGTGTATCCTCTTCGACTTCTCAGGTGTCTTCGCCATCTTCTGTGTTGATGTTTCAACAAGCAATCAATCTAGCTCCAGCCTATAGTTCAGTCTACAACAATGGTAAAACTTCTCACTTGACAAATGGTGTAAAGTTATCGTCTTTCTCCGGCAGTCGATTAAGAAAAGCAGTCCAGTCGGAGGTCAATGATCAACTAGCTCAACCCGCATCGAGTTTCAGCGGAAACCTGAGCAAAACGAGCTGCAGGCTATTCGGGTTTTCGTTAACAGAGGAAAAGCAGGTTTCCCAAATGGAGAAGGCCTTCAATGCCATCCAAAACCTCCATTGA 1902 48.0 MGGLIDLNTADDDDTPSFGGSPASSSSSSGSSSSSASICLELWHACAGPVISLPKKGSVVVYLPQAHLEMVQDFPITAIDLPPHIFCRVLDVQLHAEVGTDEVYARVSLIPESQNFEQKLQEGEIDAAGSEDDFEVAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPALDYNQQRPSQELMAKDLHGLEWRFRHIYRAGQPRRHLLTSGWSAFVNKKKLTSGDAVLFLRGEDGDLRLGIRRASQVKTGSPLPGLCSQQPSPCNLRNIIDSISKTIVFSVRCNPRTGLSEFIIPLPRFLKSINQSFSIGTRFKLCFETEDAGERRCTGRVTGISDVDPMRWPGSKWRCLVVRWDGAETNRHGRVSPWEIEPSGSPCESNGLVMPGLKRTRIKLSSDKTEFPIPNGIGQSDFDESLRFQKVLQGQEISGFDLSFDGLRNKNQRPCERRMFSSQSIGIPESHGFPNLLQGQEIFSSRPYRTTAPTPDEARDNGGQLIFNGVRVPNFKHGWPLSMHGSNSDKRVSSSTSQVSSPSSVLMFQQAINLAPAYSSVYNNGKTSHLTNGVKLSSFSGSRLRKAVQSEVNDQLAQPASSFSGNLSKTSCRLFGFSLTEEKQVSQMEKAFNAIQNLH 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4917151 4920235 + Bma025188.1 Bma07g00402 85539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00402 633 PANTHER AUXIN RESPONSE FACTOR 3 30 624 - -
Bma07g00402 633 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 624 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma07g00402 633 SMART B3_2 146 249 IPR003340 GO:0003677
Bma07g00402 633 CDD B3_DNA 144 247 IPR003340 GO:0003677
Bma07g00402 633 MobiDBLite consensus disorder prediction 1 31 - -
Bma07g00402 633 Pfam Auxin response factor 276 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma07g00402 633 MobiDBLite consensus disorder prediction 14 31 - -
Bma07g00402 633 Gene3D - 310 383 - -
Bma07g00402 633 Gene3D - 144 248 IPR015300 -
Bma07g00402 633 SUPERFAMILY DNA-binding pseudobarrel domain 139 253 IPR015300 -
Bma07g00402 633 Pfam B3 DNA binding domain 146 248 IPR003340 GO:0003677
Bma07g00402 633 ProSiteProfiles B3 DNA-binding domain profile. 146 249 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00137 Bma-Chr7:2055171 Bma07g00402 Bma-Chr7:4917151 1.40E-92 dispersed
Bma07g00402 Bma-Chr7:4917151 Bma11g00426 Bma-Chr11:4591491 0 dispersed
Bma07g00399 Bma-Chr7:4889574 Bma07g00402 Bma-Chr7:4917151 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57603 PF02362 B3 5.90E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00402 K14486 - zju:107412017 736.873