Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00447 ATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGCTGAATCTGAGAACCGGTCTTCATCTCCACCGACTGGAGTATCTCATCATGGCATTTCAAGTCCAAATCAGTTTACAATGCCTTCCCAACTTGGAATGAGTCATGCAATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGGAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTCCCCAGCCTTATGGTGGGCAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGAAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGTGGTAGATTTCTAAAGGCGAAGGAAAACGAGAACCAATCAAATGAAGTGATGTCACGAGACGAATCACAAACCAACTTAAACCTTAACAACAACAAAAACAATCCTGCTTCCTCGGACAGT 603 45.27 MASYSDGSQADDQQKHAESENRSSSPPTGVSHHGISSPNQFTMPSQLGMSHAMAPSTYPYHDPYYRSIFAPYDGQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNEVMSRDESQTNLNLNNNKNNPASSDS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5437087 5438445 + Bma031361 Bma07g00447 85584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00447 201 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 MobiDBLite consensus disorder prediction 177 201 - -
Bma07g00447 201 MobiDBLite consensus disorder prediction 1 47 - -
Bma07g00447 201 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 184 - -
Bma07g00447 201 Gene3D - 107 169 - -
Bma07g00447 201 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 MobiDBLite consensus disorder prediction 161 201 - -
Bma07g00447 201 MobiDBLite consensus disorder prediction 20 47 - -
Bma07g00447 201 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
Bma07g00447 201 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 184 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 MobiDBLite consensus disorder prediction 162 176 - -
Bma07g00447 201 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00889 Bma-Chr6:43797581 Bma07g00447 Bma-Chr7:5437087 1.55E-34 dispersed
Bma07g00447 Bma-Chr7:5437087 Bma11g00443 Bma-Chr11:5011590 1.16E-111 dispersed
Bma07g00447 Bma-Chr7:5437087 Bma11g00292 Bma-Chr11:2745528 9.09E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57606 PF02045 CBFB_NFYA 1.50E-26 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00447 K08064 - jre:109011209 284.648