Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g00447 | ATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGCTGAATCTGAGAACCGGTCTTCATCTCCACCGACTGGAGTATCTCATCATGGCATTTCAAGTCCAAATCAGTTTACAATGCCTTCCCAACTTGGAATGAGTCATGCAATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGGAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTCCCCAGCCTTATGGTGGGCAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGAAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGTGGTAGATTTCTAAAGGCGAAGGAAAACGAGAACCAATCAAATGAAGTGATGTCACGAGACGAATCACAAACCAACTTAAACCTTAACAACAACAAAAACAATCCTGCTTCCTCGGACAGT | 603 | 45.27 | MASYSDGSQADDQQKHAESENRSSSPPTGVSHHGISSPNQFTMPSQLGMSHAMAPSTYPYHDPYYRSIFAPYDGQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNEVMSRDESQTNLNLNNNKNNPASSDS | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5437087 | 5438445 | + | Bma031361 | Bma07g00447 | 85584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g00447 | 201 | PRINTS | CCAAT-binding transcription factor subunit B signature | 141 | 164 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00447 | 201 | PRINTS | CCAAT-binding transcription factor subunit B signature | 110 | 132 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00447 | 201 | MobiDBLite | consensus disorder prediction | 177 | 201 | - | - | |
Bma07g00447 | 201 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Bma07g00447 | 201 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 109 | 164 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00447 | 201 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 4 | 184 | - | - | |
Bma07g00447 | 201 | Gene3D | - | 107 | 169 | - | - | |
Bma07g00447 | 201 | ProSiteProfiles | NF-YA/HAP2 family profile. | 107 | 167 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00447 | 201 | MobiDBLite | consensus disorder prediction | 161 | 201 | - | - | |
Bma07g00447 | 201 | MobiDBLite | consensus disorder prediction | 20 | 47 | - | - | |
Bma07g00447 | 201 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 112 | 132 | IPR018362 | GO:0003677|GO:0016602 | |
Bma07g00447 | 201 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 4 | 184 | IPR001289 | GO:0003700|GO:0006355 | |
Bma07g00447 | 201 | MobiDBLite | consensus disorder prediction | 162 | 176 | - | - | |
Bma07g00447 | 201 | SMART | cbf3 | 106 | 167 | IPR001289 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00889 | Bma-Chr6:43797581 | Bma07g00447 | Bma-Chr7:5437087 | 1.55E-34 | dispersed | |
Bma07g00447 | Bma-Chr7:5437087 | Bma11g00443 | Bma-Chr11:5011590 | 1.16E-111 | dispersed | |
Bma07g00447 | Bma-Chr7:5437087 | Bma11g00292 | Bma-Chr11:2745528 | 9.09E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57606 | PF02045 | CBFB_NFYA | 1.50E-26 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g00447 | K08064 | - | jre:109011209 | 284.648 |