Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00447 ATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGCTGAATCTGAGAACCGGTCTTCATCTCCACCGACTGGAGTATCTCATCATGGCATTTCAAGTCCAAATCAGTTTACAATGCCTTCCCAACTTGGAATGAGTCATGCAATGGCACCATCGACTTATCCATATCACGATCCTTACTACAGGAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTCCCCAGCCTTATGGTGGGCAACCTATGGTTCATCTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGAAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAGACGAGCTAGAGGATGTGGTGGTAGATTTCTAAAGGCGAAGGAAAACGAGAACCAATCAAATGAAGTGATGTCACGAGACGAATCACAAACCAACTTAAACCTTAACAACAACAAAAACAATCCTGCTTCCTCGGACAGT 603 45.27 MASYSDGSQADDQQKHAESENRSSSPPTGVSHHGISSPNQFTMPSQLGMSHAMAPSTYPYHDPYYRSIFAPYDGQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLKAKENENQSNEVMSRDESQTNLNLNNNKNNPASSDS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5437087 5438445 + Bma031361 Bma07g00447 85584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00447 201 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 MobiDBLite consensus disorder prediction 177 201 - -
Bma07g00447 201 MobiDBLite consensus disorder prediction 1 47 - -
Bma07g00447 201 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 184 - -
Bma07g00447 201 Gene3D - 107 169 - -
Bma07g00447 201 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 MobiDBLite consensus disorder prediction 161 201 - -
Bma07g00447 201 MobiDBLite consensus disorder prediction 20 47 - -
Bma07g00447 201 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
Bma07g00447 201 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 184 IPR001289 GO:0003700|GO:0006355
Bma07g00447 201 MobiDBLite consensus disorder prediction 162 176 - -
Bma07g00447 201 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00447 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 284.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00889 Bma-Chr6:43797581 Bma07g00447 Bma-Chr7:5437087 1.55E-34 dispersed
Bma07g00447 Bma-Chr7:5437087 Bma11g00443 Bma-Chr11:5011590 1.16E-111 dispersed
Bma07g00447 Bma-Chr7:5437087 Bma11g00292 Bma-Chr11:2745528 9.09E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1141 Cone9ag1129 . . . . Blo08g00259 . . . . . Bma07g00447 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma11g00292 BCT,CCT,ECH 77 248 CCAAT-HAP2 Transcription Factor Family AT3G20910 56.6 2.4e-45 179.5
Bma07g00265 BCT,CCT,ECH 120 247 CCAAT-HAP2 Transcription Factor Family AT3G20910 70.5 2.3e-43 172.9
Bma11g00443 . 61 172 CCAAT-HAP2 Transcription Factor Family AT2G34720 67.2 7.7e-38 153.7
Bma11g00443 . 8 174 CCAAT-HAP2 Transcription Factor Family AT1G30500 59.1 8.1e-47 183.7
Bma07g00447 . 10 171 CCAAT-HAP2 Transcription Factor Family AT1G30500 59.5 1.7e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57606 PF02045 CBFB_NFYA 1.50E-26 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00447 Bma_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0