Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00448 ATGGCTCTTGTTATGCACAAGGATTCATTTGACAAGCAGATGGATTCTGGCAAGTATGTGAGATATACACCAGAGCAGGTTGAAGCCTTAGAGAGGGTTTATACTGAATGTCCGAAGCCTAGCTCTTTAAGGAGGCAACAGCTCATTAGGGAGTGTCCTATTCTCTCCAATATTGAGCCTAAACAAATAAAAGTTTGGTTTCAGAATCGCAGATGCCGTGAGAAGCAGAGAAAAGAATCTACTCGTCTTCAAACCGTGAACAGAAAGTTGAATGCCATGAACAAACTCTTAATGGAAGAGAATGATCGCTTGCAGAAGCAGGTCTCTCAGCTGGTTTATGATAATGGGTATATGCGTCAGCAACTGCATAGTGCATCTGGAACGACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAGCACCAACAACAGCAAAACCCAACGTCTCAGCGTCCTGAATGGGATGCTACAAGCCCAGCTGGTCTTCTGGCGATAGCAGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTACAGATGATTGGGATGAAGCCTGGTCCGGATTCCATTGGAATTGTTGCTGTTTCTCGCAACTGCCGCGGAGTAGCAGCACGAGCTTGTGGTCTAGTCAGTCTAGAGCCCACCAAAGTTGCTGAAATCTTGAAAGATCGTCCTTCATGGTTTCGCGACTGCCGATCTATTGATATACTAAATGTAATTCCTGCCAGAAATGGAGGGACAATAGAGCTCATATATATGCAGCAGACTTATGCTCCTACGACATTGGCCGCAGCTCGAGACTTCTGGACATTACGATATACCACTAATTTAGATGATGGCAGCCTCGTGGTATGCGAGAGATCTTTGAATTCCTCAACTGGTGGTCCCACAGGGCCACCTACATCGGGTTTTGCGAGAGCTGAAATGCTTCCCAGCGGATGTTTAGTCCGTGCTTGTGAGGGTGGCGGGTCAATTATTCACATTGTTGATCATATTGATTTTGATGTTTGGAGTGTACCTGAAGTTCTAAGGCCTCTTTATGAATCATCCAAGATTCTTGCCCAGAAGATGACCATATCGGTATGTACTTTTTTGAGAATTTTGTTGCTTTTTTTTTTACCGCAAATATTCAATGTCCATATGTTCATTCAGGCCCTCCGGCACATCAGACAAATCGCTCAAGAGTTTAACGGTGAAATTCAACTCGGCAGTGGCCGCCAGCCTGCTGTTTTAAGGACATTCAGTCAGAAACTGTGCAGGGGGTTCAATGATGCCATTAATGGATTTGTCGATGATGGTTGGTCCCTTATGGGAAGCGACGGTGTGGAGGATGTCACAATTATGATCAATTCATCGCCAAATAAATTTTTCAATACCCAATATGGCAGCATTGCAATGTGCACGAGTTTTGGCGGGGGTGTGTTATGTGCCAAGGCATCCATGCTATTGCAGAATGTTCCCCCTGCTTTGCTCGTTCGTTTCTTGAGGGAGCATCGCTCCGAGTGGGCTGATTATGGGGTGGATGCCTACTCTGCCGCGTGTATTAATAAGGCCAACCCTTATTCAGTCCCATGTCCCAAGCCTGGTGGCTTACCAAGTAGCCAAGTTATTCTTCCTCTTGCTCATACTGTCGAACACGAAGAGTTCTTGGAGGTGCTTCGGCTCAAGGGTCATGCATTTCCTACCGACGATGGTTTGACGGGACGGGATATGTACTTATTGCAGCTATGTAGTGGGGTTGATGAGAACTCGATTGGCTCCTGTGCCCAGCTTGTTTTTGCTCCTATCGATGAATCGTTTGCCGATGATGCCCCCCTGCTACCCTCTGGTTTTCGGGACAAGGCTGTGGTCGGCTCTGCTACTCGCACTTTGGATTTGGCTTCTACCCTTGAAGTGCGGCCTTGTGGTGCTCGTTCTGGCATTGAAGTGGATTCGGACGGCTGCAACCTTCGATCTGTATTGACAATTGCTTTCCAATTTGCTTTCGAGAGTCACATGCGAGACAGTGTTGCGGCCATGGCTCGACAGTATGTTCGAAATGTCGTGGGGTCTGTCCAGATGGTGGCTATGTCCATTGCTCCTTCTCCCATGAGTTCCCTCATGAGCTCGAAACCCCTTTCAGTTTCTCCCGCAGCTGTTACTTTGGCCCGATGGATTTGCCAAAGTTACAGAATACACGTCGGTGAGGAGCTCCTTCGAACTGATTCACAATCGAGGGATGGTATACTAAAGCAACTTTGGCACCATTCCCATGCAATTATGTGCTGTTCGGCGAAAACTAATGCATCGTCCATTTTCACCTTTGCCAACCAGGCCGGCCTCGACATGCTCGAAACTACTCTAGTTGCCCTCCAAGATATAATGCTTGACAAGATTCTTGATGAAGCTGGCCGGAAAATTCTCTGCTTGGAATTCTCCAAGATCATGCAGCAGGGATTTGTTCATCTGCCGGCCGGAATTTGCATGTCGAGCATGGGCAGGCCAGTAACGTACGAGCACGCCATTACTTGGAAAGTCCTCGACGACGAAGACTCGAATCACTGCCTGGCTTTTATGTTCATCAACTGGTCTTTTGTATGA 2607 47.56 MALVMHKDSFDKQMDSGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESTRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVYDNGYMRQQLHSASGTTTDNSCESVVMSGQHQQQQNPTSQRPEWDATSPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCRGVAARACGLVSLEPTKVAEILKDRPSWFRDCRSIDILNVIPARNGGTIELIYMQQTYAPTTLAAARDFWTLRYTTNLDDGSLVVCERSLNSSTGGPTGPPTSGFARAEMLPSGCLVRACEGGGSIIHIVDHIDFDVWSVPEVLRPLYESSKILAQKMTISVCTFLRILLLFFLPQIFNVHMFIQALRHIRQIAQEFNGEIQLGSGRQPAVLRTFSQKLCRGFNDAINGFVDDGWSLMGSDGVEDVTIMINSSPNKFFNTQYGSIAMCTSFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACINKANPYSVPCPKPGGLPSSQVILPLAHTVEHEEFLEVLRLKGHAFPTDDGLTGRDMYLLQLCSGVDENSIGSCAQLVFAPIDESFADDAPLLPSGFRDKAVVGSATRTLDLASTLEVRPCGARSGIEVDSDGCNLRSVLTIAFQFAFESHMRDSVAAMARQYVRNVVGSVQMVAMSIAPSPMSSLMSSKPLSVSPAAVTLARWICQSYRIHVGEELLRTDSQSRDGILKQLWHHSHAIMCCSAKTNASSIFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCLEFSKIMQQGFVHLPAGICMSSMGRPVTYEHAITWKVLDDEDSNHCLAFMFINWSFV 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5441162 5446232 + Bma025236.1 Bma07g00448 85585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00448 868 CDD homeodomain 18 78 IPR001356 GO:0003677
Bma07g00448 868 ProSiteProfiles START domain profile. 157 359 IPR002913 GO:0008289
Bma07g00448 868 SMART HOX_1 15 81 IPR001356 GO:0003677
Bma07g00448 868 MobiDBLite consensus disorder prediction 124 157 - -
Bma07g00448 868 Coils Coil 83 107 - -
Bma07g00448 868 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Bma07g00448 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 383 868 IPR044830 GO:0003700
Bma07g00448 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 383 868 - -
Bma07g00448 868 Gene3D - 11 84 - -
Bma07g00448 868 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Bma07g00448 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 376 - -
Bma07g00448 868 CDD bZIP 70 109 - -
Bma07g00448 868 Pfam START domain 167 369 IPR002913 GO:0008289
Bma07g00448 868 Gene3D - 185 368 IPR023393 -
Bma07g00448 868 SUPERFAMILY Bet v1-like 167 357 - -
Bma07g00448 868 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Bma07g00448 868 SMART START_1 166 375 IPR002913 GO:0008289
Bma07g00448 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 376 IPR044830 GO:0003700
Bma07g00448 868 Pfam MEKHLA domain 723 867 IPR013978 -
Bma07g00448 868 CDD START_ArGLABRA2_like 161 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00448 Bma-Chr7:5441162 Bma11g00442 Bma-Chr11:4998763 0 dispersed
Bma11g00466 Bma-Chr11:5606805 Bma07g00448 Bma-Chr7:5441162 3.21E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57607 PF01852 START 2.90E-45 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00448 K09338 - qsu:112031480 1367.83