Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00478 ATGAAGGAGAAGACCCATTTCAACCTTACCTTCGCTCTCTCGCTTTTTGTTGTTTTTCTTCTTGCTTCTTTGGTGTCCCTCTGTAATGGAGGATTCGTCATTTCTAGCCATGGCGGTCTCACTGACGCCGAGGCTTTGTATATCAGAAAGCGTCAGCTTCTTTACTACAGAGACGAGTTCGGCGATCGAGGTGAGAATGTAACCGTCGATTCTTCTCTTGTTTTTCAAAACGAACGGCTCAGAAATGCTTATGTTGCTTTACAAGCATGGAAGCAAGCTATTTTATCTGACCCTTTGAATCTTACCGATAATTGGGTTGGATCTGATGTCTGTGACTATCATGGGGTTTACTGTGCTCCGGCGCCGGACAATCACAAGATCTTAACGGTCGCCGGAATCGATCTAAACCACGGCGACATTGCTGGGTACTTACCGGAAGAGCTCTGTCTACTTGTAGATCTTGCATTGTTCCACATCAACTCTAATCGGTTTTGTGGTACTGTTCCTCACAAGTTTGAACGCCTGAAACTGCTCTACGAGCTGGATCTCAGTAACAATAGGTTCGCCGGGAAGTTTCCAGTGGTGGTTCTTAAGCTTCCATCGCTTAAATTTTTGGATCTGAGGTATAATGAATTCGAAGGTACTATACCAAGCGACCTGTTTGATAAAGATTTGGATGCTATATTTATTAATCATAACAGGTTTAGATTTGAGCTACCGGAAAATTTCGGAAATTCTCCAGTCTCTGTTATCGTTCTTGCTAACAATAAATTCCATGGTTGTGTTCCTTCGAGCTTGGGTAATATGTCGAGGCTGAACGAGATTATTATGATGAACAATGGGTTCCGATCGTGTTTACCCCCCGAGATTGGGTTGCTGAAAAATTTGACGGTGTTTGATGTGAGTTTCAATGAGCTGCTTGGTCCGTTGCCGGAAGAAATAGGGGGCATGGTCAGTTTGGAGCAGCTTAATGTGGCTCATAATCTTCTCTCCGGGAAGATTCCGGCCAGTATTTGTAAACTTCCCAATCTGCAGAATTTCACTTTCTCATATAACTTCTTTACCGGTGAGCCGCCGGCGTGCTTGGGGCTTTCAGATTTCGACGACCGAAGAAACTGCTTGCCTCAGCGGCCGCTCCAGAGGTCTGGCAAGCAATGTAAGTCGTTTTTGTCCAAGCCGGTTGACTGTGGCTCGTTTAGATGTAAACCTTTTGTTCCTACTTTACCGCCGCCACCTCCTCCGTCTCCACCTGTCTTCCCTCCGCCGCCGGTTGCTATTCCCTCTCCCCCACCTTCACCTATTTACTCTCCACAATCGCCCCCACCACCTCCCGTTTATTCTCCTCCCCCACCACCCTCTCCGCCTCCACCAATTTACTTTTCCCCTCCGCCACCTTCTCCACCGCCTCCAGTTTACTCTCCTCCTCCTCCGCCTCCACCACCTCCACCTATTTACTCTCCACCACCACCTCCACCTATTTACTCTCCTCCACCACCACCTCCACCTAGTTACTGTCCACCACCTCCTCCTCCTTTATACTCTTCGCCGCCGCCGCCTCCTATCTACTCTCCTCCACCACCTGCACCGCCACCACCACCGCCACCTCCACCACCTCCACCACCTCCTCCACCTCCTCCCCACATATTTTATCACTCTCCACCTCCGCACTCAGTTCATCACCCTCCTCCACCTCCTCCGATTGGCTGTGAAACTCCGGCTTCTCCTCCACCATCACCAATACATGTGCATGAAAATCCTCCGCCTGCTACCCCGTCATATGAAGGGCCATTACCGCCCATACGCGGAGTTTCATACGCATCTCCTCCGCCCCCACCCTTTTATTGA 1845 49.38 MKEKTHFNLTFALSLFVVFLLASLVSLCNGGFVISSHGGLTDAEALYIRKRQLLYYRDEFGDRGENVTVDSSLVFQNERLRNAYVALQAWKQAILSDPLNLTDNWVGSDVCDYHGVYCAPAPDNHKILTVAGIDLNHGDIAGYLPEELCLLVDLALFHINSNRFCGTVPHKFERLKLLYELDLSNNRFAGKFPVVVLKLPSLKFLDLRYNEFEGTIPSDLFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPSSLGNMSRLNEIIMMNNGFRSCLPPEIGLLKNLTVFDVSFNELLGPLPEEIGGMVSLEQLNVAHNLLSGKIPASICKLPNLQNFTFSYNFFTGEPPACLGLSDFDDRRNCLPQRPLQRSGKQCKSFLSKPVDCGSFRCKPFVPTLPPPPPPSPPVFPPPPVAIPSPPPSPIYSPQSPPPPPVYSPPPPPSPPPPIYFSPPPPSPPPPVYSPPPPPPPPPPIYSPPPPPPIYSPPPPPPPSYCPPPPPPLYSSPPPPPIYSPPPPAPPPPPPPPPPPPPPPPPPHIFYHSPPPHSVHHPPPPPPIGCETPASPPPSPIHVHENPPPATPSYEGPLPPIRGVSYASPPPPPFY 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5791624 5793468 - Bma025271.1 Bma07g00478 85615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00478 614 MobiDBLite consensus disorder prediction 543 595 - -
Bma07g00478 614 Gene3D Ribonuclease Inhibitor 246 374 IPR032675 -
Bma07g00478 614 Gene3D Ribonuclease Inhibitor 82 245 IPR032675 -
Bma07g00478 614 MobiDBLite consensus disorder prediction 543 614 - -
Bma07g00478 614 MobiDBLite consensus disorder prediction 429 450 - -
Bma07g00478 614 Pfam Leucine rich repeat 156 211 IPR001611 GO:0005515
Bma07g00478 614 SUPERFAMILY L domain-like 84 363 - -
Bma07g00478 614 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 464 - -
Bma07g00478 614 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 464 - -
Bma07g00478 614 PRINTS Proline rich extensin signature 444 465 - -
Bma07g00478 614 PRINTS Proline rich extensin signature 430 442 - -
Bma07g00478 614 PRINTS Proline rich extensin signature 409 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00050 Bma-Chr4:481208 Bma07g00478 Bma-Chr7:5791624 1.31E-165 dispersed
Bma06g00839 Bma-Chr6:42656303 Bma07g00478 Bma-Chr7:5791624 3.13E-96 dispersed
Bma07g00478 Bma-Chr7:5791624 Bma07g00523 Bma-Chr7:6647320 7.66E-99 dispersed
Bma07g00628 Bma-Chr7:9978128 Bma07g00478 Bma-Chr7:5791624 4.67E-07 transposed
Bma01g01776 Bma-Chr1:60490675 Bma07g00478 Bma-Chr7:5791624 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00478 - - tcc:18588631 676.396