Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00513 TTATCAGCAATGTCAGACCAACCAAACTCGGAGACTGAGTCAGGCTTCACCAACTTGTCTTCTTCACCGTCCTCATCGCCCGGAGAATCGACTGCTCAATCGCCACAGAAACGATCAGCTCAAAATATCAATCCTGACCATCCCGTTTTCCGGGGAGTCCGAAAGCGAGCTTGGGGCAAATGGGTGTCTGAAATCCGACAACCCAGAAAGAAAAATCGGATCTGGCTCGGAACTTTTTCTACACCGGAAATGGCCGCTCGAGCTCACGACGTCGCCGCTTTAAGCATAAAAGGAAACTCCGCCATTCTCAACTTCCCAGAACTCGCCGAAGCTCTCCCCCGCCCGGCTTCCAACTCCCCTCGAGATGTGCAAGTCGCCGCTGCGAAAGCCGCTTCAATGGAGTTTCCCTTTCCTTCACTGACGTCGCCATCGCCGATCACTCAGTCTTCTTCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCATCTTCCCTATCGTCTTTAGAGGAATCGACGCCGGAGGAGCTCAGTGAGATTGTACGCTTGCCGAGCTTAGGAACGAGTTACTGCTCTCCTGACTCCGGTAACGAGCTGGTCTTCGTTGACTCAGTGGAAGCCTTTCTTTATCCTTACCCATGGTATCAAAGCATAAATGAAGATGAACCTTTCTGTTTGTCAATGGCGGAAACAGAGTCAGTGATTCCTTCAGTCTGTGAAGCGTCCTTGTGCCTGCATTAA 738 50.81 LSAMSDQPNSETESGFTNLSSSPSSSPGESTAQSPQKRSAQNINPDHPVFRGVRKRAWGKWVSEIRQPRKKNRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPELAEALPRPASNSPRDVQVAAAKAASMEFPFPSLTSPSPITQSSSASSSSSSSSSSSSLSSLEESTPEELSEIVRLPSLGTSYCSPDSGNELVFVDSVEAFLYPYPWYQSINEDEPFCLSMAETESVIPSVCEASLCLH 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6393305 6394042 + Bma025314.1 Bma07g00513 85650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00513 245 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Bma07g00513 245 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Bma07g00513 245 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Bma07g00513 245 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Bma07g00513 245 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Bma07g00513 245 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Bma07g00513 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 221 - -
Bma07g00513 245 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Bma07g00513 245 MobiDBLite consensus disorder prediction 1 43 - -
Bma07g00513 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 221 - -
Bma07g00513 245 MobiDBLite consensus disorder prediction 142 172 - -
Bma07g00513 245 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Bma07g00513 245 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01347 Bma-Chr1:19155929 Bma07g00513 Bma-Chr7:6393305 9.95E-62 dispersed
Bma04g00408 Bma-Chr4:3312757 Bma07g00513 Bma-Chr7:6393305 3.68E-59 dispersed
Bma06g00036 Bma-Chr6:646393 Bma07g00513 Bma-Chr7:6393305 2.63E-23 dispersed
Bma07g00513 Bma-Chr7:6393305 Bma07g01043 Bma-Chr7:41991004 1.05E-55 dispersed
Bma01g02441 Bma-Chr1:82036124 Bma07g00513 Bma-Chr7:6393305 3.43E-35 transposed
Bma13g00765 Bma-Chr13:26465584 Bma07g00513 Bma-Chr7:6393305 4.98E-52 transposed
Bma15g00586 Bma-Chr15:7347116 Bma07g00513 Bma-Chr7:6393305 8.71E-42 transposed
Bma11g00534 Bma-Chr11:6799293 Bma07g00513 Bma-Chr7:6393305 9.46E-104 wgd
Bma06g00819 Bma-Chr6:41823166 Bma07g00513 Bma-Chr7:6393305 8.74E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57611 PF00847 AP2 1.10E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00513 K09286 - vvi:100252531 234.187