Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00517 ATGGATATCTCGGAGGAAGACCAGCTCGAGCGAGTAGACTTGGCTCCTGACTCTGAAGGATTGTCAATGAGCTCGAGCTTCTCCTCGCTCCTCACCATGTCTAGCTCCGGCGGCATCTCCACCACGAGCGTCAGCTCCGGTGAAATGGAGTCTGTGGCCCCGATACTGGTCAATCGTACAATGTCCGGTGATGTCTCGGAGAGCGTGAAAATGAAGGCGGCAGGAAGGCCGGAGAAGTGCGTGGGGAAGAACAACAAGGGAGTAAGTTGGGGCTTTACTTCCGTGATTGGACGGCGGAGAGAGATGGAGGATGCCGTCGCTGTGTTTCCAGGTTTCATGTCCCGCACTTGCGATCATGTCGGTGGTTGTACGGCTTCCGGCTCCAGAACATCCTCCGAGATCTCGCCGATCCATTTCTTCGGCGTTTACGACGGCCACGGTGGCTCTGAGGTGGCTAAATTTTGTGCGAAGAGAATGCAGAAAGTGGTAGCAGAAGAGTGGGAGAAGGAAACAGCGACTGGCTATGAATGGCGAAGGAGGTGGGAAGTTGCATTTACTAATGGTTTTGAAAGGATGGACAATGAGGTCGTAACGGAGGCGGTGACAGCCAACATGGTCGGATCAACCGCCGTGGTGGTGGTTGTCTCTGGCTGCCAAATAATTGTATCCAACTGTGGCGACTCAAGGGCAGTGCTTTGCAGGCAGACTCACACAGTCCCTCTCACCGTCGATCAAAAGCCTGATAGAGAGGATGAGCTCATGAGAATTGAAGAACTGGGAGGTAAAGTCATAAACTGGATGGGTGCTAGAGTACTTGGAGTTCTTGCCATGTCGAGAGCCATAGGTGATCGTTATCTACGGCCATGGATTATTCCGGTTCCTGAGATTACTTTTATGACTAGAAGTGATGAGGACGAATGTGTTATATTAGCGAGTGATGGGCTATGGGATGTAATGACCAACGAAGAGGTGGGTGAGGTGGTTCGTCGATTTTTAAAACGGCAAGCTAAATCTGCGACGATCAACGAGATAACTATAGCACAAACTGTTGCAGATAATCTCACCAAAATAGCATTCGGAAGAAACAGTGATGATAACATTTCCATTGTTGTCATTGATCTGAAGTCGAGGCGAACACGGTCGAAGAATTCGGCTTTAGACTCTCATTGA 1170 50.17 MDISEEDQLERVDLAPDSEGLSMSSSFSSLLTMSSSGGISTTSVSSGEMESVAPILVNRTMSGDVSESVKMKAAGRPEKCVGKNNKGVSWGFTSVIGRRREMEDAVAVFPGFMSRTCDHVGGCTASGSRTSSEISPIHFFGVYDGHGGSEVAKFCAKRMQKVVAEEWEKETATGYEWRRRWEVAFTNGFERMDNEVVTEAVTANMVGSTAVVVVVSGCQIIVSNCGDSRAVLCRQTHTVPLTVDQKPDREDELMRIEELGGKVINWMGARVLGVLAMSRAIGDRYLRPWIIPVPEITFMTRSDEDECVILASDGLWDVMTNEEVGEVVRRFLKRQAKSATINEITIAQTVADNLTKIAFGRNSDDNISIVVIDLKSRRTRSKNSALDSH 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6448042 6450366 + Bma025320.1 Bma07g00517 85654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00517 389 CDD PP2Cc 91 374 IPR001932 -
Bma07g00517 389 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Bma07g00517 389 PANTHER ALPHABET, ISOFORM E-RELATED 45 382 - -
Bma07g00517 389 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 45 382 - -
Bma07g00517 389 Pfam Protein phosphatase 2C 97 367 IPR001932 -
Bma07g00517 389 SMART PP2C_4 78 372 IPR001932 -
Bma07g00517 389 MobiDBLite consensus disorder prediction 1 22 - -
Bma07g00517 389 SUPERFAMILY PP2C-like 84 375 IPR036457 -
Bma07g00517 389 Gene3D - 77 383 IPR036457 -
Bma07g00517 389 ProSiteProfiles PPM-type phosphatase domain profile. 89 374 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00916 Bma-Chr1:8903840 Bma07g00517 Bma-Chr7:6448042 5.68E-86 dispersed
Bma07g00517 Bma-Chr7:6448042 Bma15g00328 Bma-Chr15:3199290 5.02E-88 dispersed
Bma07g00517 Bma-Chr7:6448042 Bma02g00345 Bma-Chr2:5551512 1.54E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00517 K14497 - vvi:109121390 496.508