Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00579 ATGGATGGATTTGAGGGAACGAGTGGCATTGTCAAGGAACTCGTCTCTGCAGGCATCAGCCAAGTAATATCCATGGTCCAAGAACTTCTAACTATGGTGGTCGAGTCAGTAAATAGCAACGGCGATCACAAGCTCGGAAATGAAAACCGATTTCCATCGTGGGTTCGCCCGGAAGAGAAGAAACTTCTGGAAGCCAATGGATTTAGTGCAGACGTCGTTGTGGCTGCTGATGGAACTGGGAATTTCACGAAGGTGATGGATGCGGTTTTAGCAGCTCCAGATTATAGCATGCGACGTTTCGTTATATACATCAAAAAGGGTGTCTACAGAGAATACGTCGAGATTAAGAAGAAGAAATGGAACCTCGTGATGATCGGAGACGGAATGGGCGCTACTGTCATAACTGGTAATCGGAGTTACGTCGACGGGTGGACAACTTTCCGGTCTGCAACTTTTGCCGTGAGCGGGAGAGGATTTATAGCGAGAGATATAACGTTCGAGAACACTGCCGGACCGGCGAAGCACCAGGCGGTGGCCCTGAGATCTGACTCCGACCTATCGGTATGTTTCAGGTGCGACATTAGAGGCTACCAAGACACGCTCTACACTCACACGATGCGCCAGTTCTACCGAGAATGTCGGATTAGCGGCACCGTCGATTTTCTCTTCGGAGACGGAACTGTAGTTTTCCAAAAATGCCTATTTCTTGCAAGAAAAGGCCTTCCAAATCAGAAAAACACCGTCACTGCTCAAGGCCGGACTGATCCAAATCAGCCCAGCGGCTTCTCCATTCAATTCTGCAACTTTACGGCGGATTCCGACCTGCAGGCCTATCTCAACTCCACGCCCACGTACCTCGGCCGGCCGTGGAAGCCTTATTCACGCACCATTATCATACAGTCTTACATGACTAATGCCATCAGGCCAGAAGGGTGGCTGGAGTGGAATGGTAGTCTTCATTTGACTACGCTGTACTATGCGGAGTTTTCAAATTCTGGGCCGGGAGCAATGCCAGCGAGCAGGGTCAAGTGGCCGGGCTACCATGCATTCAACCAGTCCGCTCAAGCTGCTAACTACACGGTGGCGCAATTTATTGAGGGAGACCTGTGGTTGCCGTCCACCGGCGTTAAATACACGGCTGGGTTGGGCGTCTGA 1155 50.82 MDGFEGTSGIVKELVSAGISQVISMVQELLTMVVESVNSNGDHKLGNENRFPSWVRPEEKKLLEANGFSADVVVAADGTGNFTKVMDAVLAAPDYSMRRFVIYIKKGVYREYVEIKKKKWNLVMIGDGMGATVITGNRSYVDGWTTFRSATFAVSGRGFIARDITFENTAGPAKHQAVALRSDSDLSVCFRCDIRGYQDTLYTHTMRQFYRECRISGTVDFLFGDGTVVFQKCLFLARKGLPNQKNTVTAQGRTDPNQPSGFSIQFCNFTADSDLQAYLNSTPTYLGRPWKPYSRTIIIQSYMTNAIRPEGWLEWNGSLHLTTLYYAEFSNSGPGAMPASRVKWPGYHAFNQSAQAANYTVAQFIEGDLWLPSTGVKYTAGLGV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8181006 8182246 - Bma025402.1 Bma07g00579 85716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00579 384 Gene3D - 66 382 IPR012334 -
Bma07g00579 384 ProSitePatterns Pectinesterase signature 1. 96 115 IPR018040 -
Bma07g00579 384 SUPERFAMILY Pectin lyase-like 68 381 IPR011050 -
Bma07g00579 384 Pfam Pectinesterase 71 368 IPR000070 GO:0030599|GO:0042545
Bma07g00579 384 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 2 382 - -
Bma07g00579 384 PANTHER PECTINESTERASE 2 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00579 Bma-Chr7:8181006 Bma15g00533 Bma-Chr15:6156349 3.76E-130 dispersed
Bma03g00763 Bma-Chr3:6977631 Bma07g00579 Bma-Chr7:8181006 7.96E-10 transposed
Bma01g00279 Bma-Chr1:2334681 Bma07g00579 Bma-Chr7:8181006 4.23E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00579 K01051 - qsu:112004696 606.675