Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00655 ATGAAGACGCCGGCGAATGGCGCCGGAGCTGCATCAGCACCAAATAGTATGGAAGGCGAGAAGAAGATCATAAACCCAGAGTTATGGCAAGCGTGCGCCGGACCTCTGGTGAACCTCCCTCCGGCGGGGACCCACGTGGTGTATTTCCCTCAAGGTCACAGCGAGCAGGTTGCTGCATCTATGAAAAAAGATGCGGATGCTCAAATCCCGAACTACCCAAATCTTCCGTCGAAGATTCTGTGCCTCCTTCACAATGTCACTTTACATGCTGATCCGGAAACAGATGAAGTATATGCTCAAATGACTTTACAACCAGTTTCCTCGTTGGATAAGGATGCATTACTGAGATCCGATCTTGCACTCAAGTCTAATAAGCCGCAGCCCGAATTTTTCTGTAAGACGTTGACGGCAAGCGATACAAGCACTCATGGAGGATTTTCAGTTCCTCGTCGTGCGGCGGAGAAAATTTTCCCTTCTCTTGATTTCTCTTTGCAGCCACCGGCTCAAGAACTTACGGCAAGGGATTTGCACGATAATGTGTGGAGGTTTCGTCATATCTATCGCGGACAACCGAAACGCCATTTGCTGACAACTGGTTGGAGCCTATTTGTCAGTGGAAAGAGGCTTCTTGCTGGCGACTCTGTTTTGTTCATTAGGGATGAAAGGCAGCAGCTGCTTCTGGGAATTAGACGGGCTAACAGGCAGCCCACCAACTTATCGTCATCCGTCCTGTCGAGCGATAGTATGCATATCGGAATTCTTGCTGCCGCAGCTCATGCAGCTGCCAACAATAGCCCCTTCAATGTCTTTTACAATCCAAGGGCGAGTCCATCGGAATTCGTTATACCTCTAGCGAAATACTACAAAGCTGTCTATGGAAATCAATTATCGCTCGGCATGCGTTTCCGGATGATGTTCGAAACTGAAGATTCCGGAACCAGAAGGTATATGGGCACAATTACAGGCATCAGTGATCTTGATCCCATCAGATGGAAGAACTCTCAATGGCGTAATCTGCAGGTCGGGTGGGATGAATCCACTGCCGGAGAGAGGCGAAATCGGGTTTCGATCTGGGAAATCGAACCCGTGATAGCCCCATTTTTCATCTGCCCACCTCCGTTCTTGAGATCGAAGCGTCCGAGGCAACCTGGAATGCCAGATGACGAGGCCCACGATATGGATAGCCTGTTTAAAAGGGCAATGCCTTGGCTTGGAGATGATGGTACTAGCATGAAGGATTCTCAAGCACTTCCTGGCCTAAGCCTGGTTCAATGGATGAATATGCAGCAAAACCCATCTTCAGCCAACTCAATACAAACAAACTATATTCAACCCTTTTCCAATACCCTTTTACAAAACCTCAATGGAGCACAAATTCCTCCTACGAATAACTTGCAGTTTAACACCCAAAAGCTACCACCTCGGCAACTTCCACAGTTTGATCAGCTCACTAAACTCCCGTCCGGGCTTAGCCCTTTAGGATCAGTTGTCCAGACTCCGCAACAGTCGGGCGATGTTTTTCAGCAGCCTATGCAAAATTTGGTCAATCAAAGCCTACCTTCCAGCCAAGTTCCCCTCCAAATACTGCAACCACAAGCACTGCCTCAGAGCAACTGTAATAATATTCAGCAGCAGCCGTCTTCTCAGAGCCTTAATTTTCAACGAAATCTTCATCAAAGCCTGCAAATGCAGAATATTATTGGTCAGACTGATCAGCAGAATGCTATTCAATCTCACCTCCTTGATCAAGCAAATCAGCAGCTACCAATATCCGATAATCAGGCTAATCTTCAACTCTTGCAGAGGCAACAACAGTCTCTTCAATCACAGCAGTCTGCACTACAGCAGCAAGCTCAACTTATTCAGCTCCATGATCAGCAGAGACAGCTTTTAGATGTCTCCCATAGCTTCTCCACTGCCACTCCATCCCTACTTCCCCAATCGAACCAATTCAAGACGGCTAACCTGACAAATAATCACTTTTCCCTTCCAACCCTTCTGCCAAACGCCCCCCAACAAACGGGGGTGTTGAGTGATATGTCTGGTCAGATGAAAATTTGCCCCACTCCAACGACTAATCATATCTCTGCAGCTTCTTGCGGTGTAGCAAATGGAGCTGCTGGATTGGGTCAATCTGTAATTACCGATGAAGTTCCATCTTGCTCAACTTCACCTTCGACAAATAACTACGCAGATGTGGTTCAACCGTTGATTAATGGTCGGATTCGTCGTTTTGGACTTGAAGAGGAAATGGCTCAGTCTGCATCCAAAATCTTGAGTCCTAACTCGATTAAAGATTTGCAGCCGAAGCCAGAAGTGAAGTCTTCGATCATTCTTCTCAAAAATCAAGAACAATGCTTGTTTTCCCAGCAAACGTTCTTAAATGGCGCCACTCCGCAAACAGATTTCTTGGACTCATCTTCTTCAACTACCGCAGTATGCCTTTCGCAGAACGAAGCCCGTTTGCAGCAGAATAACTGGATGTCATTCAATTCTCAACCATTGCTGAGAAACACAAGTCAAGAGCTTGAAGTTCCTGTCGATCAGCACCATAATTTCTCATTCGGGCCGAATATGGATGGTCAAGTGGGAGAACAGTTAATAATCGATCCTTTATCATACAAGGGTGTGACAGGAATCAGCAAGGATTTCTCGAATATTATGTCCTCCAATGGCACGACCGCAATATATGAAAATCCAGAAGACCCTCAAAAGGAGCTTGCTTCTCCAGTAGCTTCTCAGTCATTTGGAGTTCCAGATATGGCATTTAATTCCATCGATTCCACTATAAACGATAGCAGTTTCTTAAGCAGAAGTCAGTGGGCACCTCCTCCACAGATTCAAAGAATGAGGACATTCACCAAGGTCTACAAGCGTGGAGCTGTCGGAAGATCAATTGATATGACGAGATATTCGGGTTATGACGAACTCAAACAAGATCTTGCTCGAAGATTTGGGATCGAAGGCCAATTGGAGGACCGCCAGAGAATCGGATGGAAACTTGTGTATGTAGATCATGAGAATGACGTTTTACTCGTGGGGGACGATCCTTGGGAGGAGTTTGTTAGCTGTGTGAGGTGCATTAAGATCTTATCCCCTCAAGAAGTACAGCAAATGAGTATGGATGGAGATATTGGAAATGGGGTCCTCCAAAATCAAGCATGCAGCAGCTCTGACTGTAGAAACACTTAA 3192 46.3 MKTPANGAGAASAPNSMEGEKKIINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASMKKDADAQIPNYPNLPSKILCLLHNVTLHADPETDEVYAQMTLQPVSSLDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPSLDFSLQPPAQELTARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDERQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFNVFYNPRASPSEFVIPLAKYYKAVYGNQLSLGMRFRMMFETEDSGTRRYMGTITGISDLDPIRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDEAHDMDSLFKRAMPWLGDDGTSMKDSQALPGLSLVQWMNMQQNPSSANSIQTNYIQPFSNTLLQNLNGAQIPPTNNLQFNTQKLPPRQLPQFDQLTKLPSGLSPLGSVVQTPQQSGDVFQQPMQNLVNQSLPSSQVPLQILQPQALPQSNCNNIQQQPSSQSLNFQRNLHQSLQMQNIIGQTDQQNAIQSHLLDQANQQLPISDNQANLQLLQRQQQSLQSQQSALQQQAQLIQLHDQQRQLLDVSHSFSTATPSLLPQSNQFKTANLTNNHFSLPTLLPNAPQQTGVLSDMSGQMKICPTPTTNHISAASCGVANGAAGLGQSVITDEVPSCSTSPSTNNYADVVQPLINGRIRRFGLEEEMAQSASKILSPNSIKDLQPKPEVKSSIILLKNQEQCLFSQQTFLNGATPQTDFLDSSSSTTAVCLSQNEARLQQNNWMSFNSQPLLRNTSQELEVPVDQHHNFSFGPNMDGQVGEQLIIDPLSYKGVTGISKDFSNIMSSNGTTAIYENPEDPQKELASPVASQSFGVPDMAFNSIDSTINDSSFLSRSQWAPPPQIQRMRTFTKVYKRGAVGRSIDMTRYSGYDELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVSCVRCIKILSPQEVQQMSMDGDIGNGVLQNQACSSSDCRNT 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10909727 10915648 + Bma025509.1 Bma07g00655 85792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00655 1063 Gene3D - 295 365 - -
Bma07g00655 1063 Gene3D - 129 232 IPR015300 -
Bma07g00655 1063 CDD B3_DNA 130 222 IPR003340 GO:0003677
Bma07g00655 1063 Pfam AUX/IAA family 949 1036 IPR033389 -
Bma07g00655 1063 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1058 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma07g00655 1063 ProSiteProfiles PB1 domain profile. 951 1035 IPR000270 GO:0005515
Bma07g00655 1063 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma07g00655 1063 SUPERFAMILY CAD & PB1 domains 964 1029 - -
Bma07g00655 1063 Gene3D - 946 1040 - -
Bma07g00655 1063 SUPERFAMILY DNA-binding pseudobarrel domain 120 260 IPR015300 -
Bma07g00655 1063 PANTHER AUXIN RESPONSE FACTOR 1 1058 - -
Bma07g00655 1063 SMART B3_2 131 233 IPR003340 GO:0003677
Bma07g00655 1063 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Bma07g00655 1063 Coils Coil 590 617 - -
Bma07g00655 1063 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00269 Bma-Chr1:2235875 Bma07g00655 Bma-Chr7:10909727 0 dispersed
Bma01g02358 Bma-Chr1:81282895 Bma07g00655 Bma-Chr7:10909727 7.57E-37 dispersed
Bma04g00238 Bma-Chr4:2055814 Bma07g00655 Bma-Chr7:10909727 1.49E-163 dispersed
Bma06g01012 Bma-Chr6:46669733 Bma07g00655 Bma-Chr7:10909727 4.88E-58 dispersed
Bma07g00655 Bma-Chr7:10909727 Bma07g00773 Bma-Chr7:22588261 5.79E-35 dispersed
Bma07g00655 Bma-Chr7:10909727 Bma07g00661 Bma-Chr7:11296912 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57619 PF02309 AUX_IAA 1.90E-07 CL0072 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00655 - - vvi:100263801 1426.38