Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00704 ATGGAAAACCTTAATAACTCCTACATGGAAGGCGAGATCTCTTCTGACCTGCTGTTAGGTCTCCTTGCTCAACTCCATGAAAGCATTTCCAAGGTTGAATGTCTTCGACCTTCAAAGCAAGTAAATACCCTCTTCACAAACCTCGTCAATCTTTGCATTCTTCCATCCTCCATCGATGTTACGACACTGCCTGAAGAAGATCAGATTATGCGTGAGACTCTCATGACTCGCAGCGGACAAGCAGAGGGCCTTTTAGAGTTTGAATTCGCAAACATGCTCACCAAAATACCACAACCTTTAAACAATCTCAACCTCTTCCCTTACTATGAAAATTACATCAAACTAGCAAATGTTGAGTATGGAATTCTAAGGGAAAATGGGGTGGTCGACCCAAAAAAAGTTGCCTTCATTGGTTCAGGTCCAATGCCTTTAACATCAATCGTACTGGCAACCCTCCACATGAAATTCACTCATTTTGATAATTTTGATATCGACATGAGGGCAAATGATGTGGCTCGACAGATAGTAGCTTCTGATGCTGAGTTTGAGAAGAGGATGAAGTTTTACACAAGAGATGTACTTGAGGTAAAGGAGAATCTTAGTGAGTATGACTGTATTTTCTTGGCAGCTCTTGTAGGGATGAGCAAGGATGAGAAGATAAAGATTCTAGGGCATGTGAGAAAATACATGAAAACTGGAGGAAACTTGCTGGTGAGAAGCGCAAAAGGAGCGAGAGGGTTTCTATACCCCATAGTCGAGGAGGAGGATTTGGAGGGTTTTGAAGTTCTCTCCATTTTTCATCCGACTGATGATGTTGTCAACTCAGTGATTTTGGTTCGAAAACCCTAA 849 41.93 MENLNNSYMEGEISSDLLLGLLAQLHESISKVECLRPSKQVNTLFTNLVNLCILPSSIDVTTLPEEDQIMRETLMTRSGQAEGLLEFEFANMLTKIPQPLNNLNLFPYYENYIKLANVEYGILRENGVVDPKKVAFIGSGPMPLTSIVLATLHMKFTHFDNFDIDMRANDVARQIVASDAEFEKRMKFYTRDVLEVKENLSEYDCIFLAALVGMSKDEKIKILGHVRKYMKTGGNLLVRSAKGARGFLYPIVEEEDLEGFEVLSIFHPTDDVVNSVILVRKP 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15795057 15795905 - Bma025616.1 Bma07g00704 85841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00704 282 Pfam Nicotianamine synthase protein 16 281 IPR004298 GO:0030410|GO:0030418
Bma07g00704 282 Gene3D Vaccinia Virus protein VP39 20 282 IPR029063 -
Bma07g00704 282 CDD AdoMet_MTases 162 238 - -
Bma07g00704 282 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 282 IPR004298 GO:0030410|GO:0030418
Bma07g00704 282 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 240 IPR029063 -
Bma07g00704 282 PANTHER NICOTIANAMINE SYNTHASE 3 4 282 IPR004298 GO:0030410|GO:0030418
Bma07g00704 282 PANTHER NICOTIANAMINE SYNTHASE 4 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00704 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - pop:18098035 412.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00704 Bma-Chr7:15795057 Bma15g00862 Bma-Chr15:22857385 1.73E-172 dispersed
Bma07g00704 Bma-Chr7:15795057 Bma13g00601 Bma-Chr13:14215672 1.20E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1022 . . . . . . Bma07g00704 . Cmo10g00434 . . . . . Sed11g0754 . Cpe18g00614 Bhi02g00770 Tan09g1670 Cmetu02g0920 . Hepe09g0493 . . . . . . . . . . . . . Lsi06g01131 . . Cme02g01552 Blo08g00479 Blo14g00652 Bda02g00283 . Bpe08g00689 . . . . . . Cma10g00403 . Car10g00382 . . . . . . . . . . Cla06g01317 Cam06g1467 Cec06g1523 Cco06g1519 Clacu06g1426 Cmu06g1388 Cre06g2196 . Csa01g02140 Chy02g02214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00617 . 1 318 Nicotianamine Synthase Gene Family AT1G09240 60.6 9.0e-107 383.6
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 65.3 2.4e-99 359.0
Bma14g01297 . 1 314 Nicotianamine Synthase Gene Family AT1G09240 58.8 9.0e-99 357.1
Bma13g00601 BCT 1 285 Nicotianamine Synthase Gene Family AT1G09240 61.2 8.4e-97 350.5
Bma07g00704 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 53.0 3.8e-73 271.9
Bma15g00862 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 54.1 1.4e-72 270.0
Bma01g00617 . 3 318 Nicotianamine Synthase Gene Family AT1G56430 58.4 1.2e-101 366.7
Bma14g01298 BCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 64.7 7.0e-99 357.5
Bma14g01297 . 3 314 Nicotianamine Synthase Gene Family AT1G56430 57.2 1.7e-97 352.8
Bma13g00601 BCT 4 306 Nicotianamine Synthase Gene Family AT1G56430 55.3 1.8e-94 342.8
Bma07g00704 . 11 281 Nicotianamine Synthase Gene Family AT1G56430 52.0 4.1e-75 278.5
Bma15g00862 . 16 281 Nicotianamine Synthase Gene Family AT1G56430 53.0 5.0e-73 271.6
Bma01g00617 . 1 311 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.3e-100 363.2
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 62.2 4.5e-98 354.8
Bma14g01297 . 1 296 Nicotianamine Synthase Gene Family AT5G04950 56.0 1.0e-94 343.6
Bma13g00601 BCT 1 303 Nicotianamine Synthase Gene Family AT5G04950 55.6 3.9e-94 341.7
Bma14g01298 BCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 61.7 7.1e-96 347.4
Bma01g00617 . 1 313 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.2e-95 346.7
Bma14g01297 . 1 296 Nicotianamine Synthase Gene Family AT5G56080 56.2 7.4e-93 337.4
Bma13g00601 BCT 1 303 Nicotianamine Synthase Gene Family AT5G56080 55.6 1.6e-92 336.3
Bma07g00704 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.4 7.9e-71 264.2
Bma15g00862 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.7 3.0e-70 262.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00704 Bma_Chr07 FPKM 0.952948 0.975547 3.24704 2.906354 14.164001 12.387563 13.788727 1.904747 1.57413 1.184034