Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00724 GCAATGGCTCTCCGGCTCTTTCTTCTCGTTCTCCTCTATTCCGCCATACTTTGCTTTTCATACGAGCCTCAAAACCCTGAAGTGGGGGCTCTGATAAGCATAAAAACTGCTTTGAATGATCCTCGTGGAGTTCTAACCAACTGGGACGAATTCTCTGTCGACCCGTGTAGCTGGACGATGATAACTTGCTCACCTGAGAATATTGTGATTGGATTAGGAGCTCCGAGCCAGTCTTTGTCCGGAACTTTATCTTGGGCTATTGGAAATCTCACTAATCTTCGACAAGTGTTGTTGCAGAACAACAACATTTCAGGCACAATTCCCCCGGAATTAGGAGCTCTTCCCATGCTTCAGACGTTAGATCTTTCTAACAATAGATTCTCTGGATTAGTTCCTCAGACTTTGGGTCAGTTGAATGGTCTCCACTATCTGAGACTCAACAACAATAGCTTGTCTGGTCCTTTTCCCATGTCTTTAGCCAAGATTTCACAGCTTGCTTTCTTGGATTTGTCGTTCAACAGTCTCAGTGGTCCGGTGCCGAAATTTCCACTTAAAACATTCAATGTTGTGGGAAACCCTTTGATTTGTGGAAGCAGCTCTGCTGAAAGTTGTTCTGGATTATCTACCCCTGTTCCTCTTTCATTCACTCTAGACTCATCATCTCCTGGAAGACAAAAGTCTAAAAAACTTGCAATTTCCCTTGGGATCAGTCTCAGCTGTGCATTTTTAGTTCTCATAGCTCTTGGAATTCTTTGGCGAAGAAAAAGGCTGAAAAACCAATCAATCCTGCTCATAAACGAAAACCAGGAAGTGGGACTAATGAGCTTAGGCAACCTAAGAAACTTCACTTTCAAAGAACTCCAGTCAGCAACAGACCATTTCAGCTCCAAGAACATTCTTGGTGCTGGAGGCTTTGGTAATGTATATAAAGGAAAGTTAAGCGACGGGATGATAGTGGCAGTGAAACGACTCAAAGATGTCACCGGAACAACTGGTGAATCCCAATTTCAGACGGAATTAGAAATGATCAGTCTGGCCGTCCATCGGAATTTGCTTCGCTTGATTGGCTACTGCGCCACTTCACACGAGAAGCTCTTGGTTTACCCTTACATGTCTAATGGCAGTGTGGCTGCTCGCCTTAGAGGAAAACCAGCATTAGATTGGAATACAAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGATTGCTATATCTACATGAGCAATGTGATCCAAAGATAATTCATAGAGATGTGAAGGCTGCAAATGTTCTACTCGATGATTTCTACGAAGCTGTGGTTGGCGATTTTGGCCTGGCAAAGCTGCTCGACCATGCTGATTCACACGTGACCACTGCTGTTCGTGGCACTGTTGGGCACATTGCACCTGAATACCTCTCCACCGGTCAGTCGTCTGAGAAAACCGACGTTTTTGGATTTGGAATTTTGTTGTTGGAGCTTATAACTGGTATGAGAGCTCTTGACTTTGGCAAAACGATTAATCAGAAAGGGGCGATGCTCGAGTGGGTGAAGAAGATACAACAGGAGAATAAAGTGGAGTTGGCGGTGGACAGAGAGCTGGGGAGCAACTATGACAAGATAGAAGTTGTTGAAATGTTGCAAGTAGCTCTTCTTTGCACTCACTACCTTCCGGCTCATCGCCCTAAGATGTCTGAAGTGGTTCGAATGCTTGAAGGCGACGGCCTCGTTGATAAATGGGCTGCCTCGAACAATCACTCGAATCCCAACATCAACCTCTTCCAAACCCAAAGCACAAGCAAAAGCACACTTAGAACTTTGTCAGCAACTAAGCAGGACAGCGATGATCGCGATTGTTCAAGCATGTTCACTGCCGGTTTGGAGGAAGACGATGATGATCGGTCAATGGATTCCTATCCCATGGAACTTTCGGGTCCGAGGTGA 1920 45.21 AMALRLFLLVLLYSAILCFSYEPQNPEVGALISIKTALNDPRGVLTNWDEFSVDPCSWTMITCSPENIVIGLGAPSQSLSGTLSWAIGNLTNLRQVLLQNNNISGTIPPELGALPMLQTLDLSNNRFSGLVPQTLGQLNGLHYLRLNNNSLSGPFPMSLAKISQLAFLDLSFNSLSGPVPKFPLKTFNVVGNPLICGSSSAESCSGLSTPVPLSFTLDSSSPGRQKSKKLAISLGISLSCAFLVLIALGILWRRKRLKNQSILLINENQEVGLMSLGNLRNFTFKELQSATDHFSSKNILGAGGFGNVYKGKLSDGMIVAVKRLKDVTGTTGESQFQTELEMISLAVHRNLLRLIGYCATSHEKLLVYPYMSNGSVAARLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFYEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALDFGKTINQKGAMLEWVKKIQQENKVELAVDRELGSNYDKIEVVEMLQVALLCTHYLPAHRPKMSEVVRMLEGDGLVDKWAASNNHSNPNINLFQTQSTSKSTLRTLSATKQDSDDRDCSSMFTAGLEEDDDDRSMDSYPMELSGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18574395 18578134 + Bma025666.1 Bma07g00724 85861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00724 639 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Bma07g00724 639 SMART LRR_typ_2 90 113 IPR003591 -
Bma07g00724 639 SMART LRR_typ_2 114 137 IPR003591 -
Bma07g00724 639 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Bma07g00724 639 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 639 - -
Bma07g00724 639 Gene3D Transferase(Phosphotransferase) domain 1 371 581 - -
Bma07g00724 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Bma07g00724 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Bma07g00724 639 MobiDBLite consensus disorder prediction 580 601 - -
Bma07g00724 639 MobiDBLite consensus disorder prediction 602 621 - -
Bma07g00724 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 639 - -
Bma07g00724 639 MobiDBLite consensus disorder prediction 580 639 - -
Bma07g00724 639 SMART serkin_6 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00724 639 SUPERFAMILY L domain-like 27 192 - -
Bma07g00724 639 ProSiteProfiles Protein kinase domain profile. 294 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g00724 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Bma07g00724 639 PRINTS Leucine-rich repeat signature 117 130 - -
Bma07g00724 639 PRINTS Leucine-rich repeat signature 162 175 - -
Bma07g00724 639 Pfam Protein tyrosine and serine/threonine kinase 297 563 IPR001245 GO:0004672|GO:0006468
Bma07g00724 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Bma07g00724 639 SUPERFAMILY Protein kinase-like (PK-like) 274 564 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00140 Bma-Chr1:1343567 Bma07g00724 Bma-Chr7:18574395 0 dispersed
Bma02g00968 Bma-Chr2:49871952 Bma07g00724 Bma-Chr7:18574395 3.43E-174 dispersed
Bma06g01441 Bma-Chr6:51107230 Bma07g00724 Bma-Chr7:18574395 1.24E-174 dispersed
Bma07g00724 Bma-Chr7:18574395 Bma12g00378 Bma-Chr12:7224813 8.03E-139 dispersed
Bma07g00722 Bma-Chr7:18278365 Bma07g00724 Bma-Chr7:18574395 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66611 PF07714 PK_Tyr_Ser-Thr 4.20E-42 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00724 - - csv:101218629 1010.36