Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00773 ATGAGGCTCTCTTCAGCTGGTTTTAGCCCTCAAAACCAAGAAGGTGAAATGAAGGTCCTGAATTCTGAGCTTTGGCACGCCTGCGCAGGGCCCCTCGTTTCGCTACCTGCGGTCGGGAGTCGTGTTGTATATTTTCCTCAGGGTCACAGCGAGCAGGTGGTGGCTACGACAAATAAAGAAGTCGATTCCCATATCCCCAACTATCCGACCTTGCCACCACAACTAATTTGTCAACTACACAATGTAACCATGCAAGCTGATGTCGAAACAGATGAAGTGTATGCTCAAATGACATTGCAGCCTCTGAGCCCTCAAGAGCAAAAGGAAGCATATCTTCCTGTTGAGTTGGGCGTCCCAAGCAAACAGCCAACAAACTATTTTTGTAAGACATTGACAGCCAGTGACACAAGTACTCATGGAGGGTTTTCCGTGCCTCGACGAGCCGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCCCAGCAGCCCCCAGTCCAGGAGTTGATTGCGAGAGATCTTCATGATAATGAATGGATATTTAGACATATATTCCGCGGTCAGCCGAAAAGGCACCTCCTAACAACTGGATGGAGTGTGTTTGTGAGTGCTAAACGGCTTGTTGCTGGCGATTCCGTGCTCTTCATATGGAATGAGAAAAACCAGTTGCTACTTGGAATTCGCCGTGCTACTCGACCGCAGACAGTGATGCCTTCATCAGTTTTATCTAGTGACAGCATGCACTTAGGCCTTCTTGCAGCTGCTGCGCATGCTGCTGCCACAAATAGCCGTTTCTCGATATTTTACAATCCGAGGGCTAGCCCATCTGAATTTGTGATACCCTTGGCAAAATATGTGAAAGCAGCCTATCATACTCGTGTGTCCGTGGGCATGCGGTTTAGAATGCTTTTTGAAACAGAAGAGTCAAGTGTCCGTCGCTACATGGGCACAATCACGGGCATTAGTGATCTAGATCCTGTTCGATGGCGAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACGGCTGGAGAGAGACAACCAAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACATTCCCGATGTATTCGTCTCCATTTCCACTTCGGCTCAAGCGACCATGGCCCACTGGACTGCCTGCTTTCCATGGGATTAAAGAGGATGAAGTGGGACTAAATTCTCCGTTAATGTGGCTACGAGGAGATGCCGGGGATCTGGGAATTCAATCTTTGAACTTTCCCGGAGTTGGAGTGTCACCATGGATGCAGCCAAGACTCGATGCTTCCATGCTTGGCATGCAATCTGATATGTATCAAGCCATGGCTGCTGCTGCTCTGCAAGAAATGAGAGCTTCTGATCCATCCAAACTTCTTCAATTTCAGCAAACCCAGAGCCTTCCAGGCCGATCTCCTGCCCTGCTTCAAACCCAGATGCTGCAAAATTCTCAACCTCAACAAGCTCTTCTTCATTCCGTTCAACAAAACCCACATCATACTCAATCCCAATCTCAAACTCAGTCGCATGTCTTTCAGCAGCAGATGCATCAAAAGCAGCCGTTCAGTAATCAACACCAACAGCAACTGGTTGAGCACCAAATTCCGAGCACTATTTCAACAATTTCTCAGTTTTCGACGACTTCTCAACCCTCGTCATCATCGATGCAGACACTCCCATCGCTATGCCCACAACAGAGCTTCTCCGATTCGAATGTTAACCCAGTGTCTAGCTCTGTTATTTCGCCTTTGGACAGCCTCTTATGCTCATTTCCTTCCGATGAATCAACTAAACTACCCAATCTGGCTAGACCCAACTTGTTGATACCTTCCTCGTCGTGGCCTTCAAAGCGAGCTGCAGTTGATCCTCTTCTCTCAGGCACTCCTCAATTTGTCATGTCTCATTTGGAACATTTGGGGACATCTCAAGCTAATGTGCCCCCAAATTCCATTTCGTTGCCACCATTTCCCCTTCGAGATTGCACAATTGACCAAGGAGGCACCGATCCTCAAGGCCGTCTTCTATTTGGTGTTAATATAGACCATTCCACTTTTCTAATGCAAAATGGAATGTCAAGTCTCAGGGGAGTTGGCAGTGAGGGTGATTCATCTACTCTTCCCTTCCCTTCCAACTACATGAGCTCTGCCGCTACTGATTTCTCGGCTAACACAACTATGACACCTTCCTGTTGCATTGATGACTCGGGTTTCATGCAGCCCTCGGAAAATGTGGGCCAAGTAAACCCACCGATGAGAACCTTCGTTAAGGTTTACATGTCAGGGTCCTTTGGTAGGTCGCTGGATATTACTAAATTCAGCAGTTACCACGAGCTACGCAGTGAGCTTGCTCAAATGTTTGGGATTGAAGGCGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGCGATGGACCGTGGCCGGAGTTTGTGAATAGCGTGTGGTGCATAAGAATTCTGTCACCCCAAGAAGTGCAGGAGATGGGAAAACGAGGCCTGGAGCTTTTGAACTCAGTGCCGATTCAGAGGCTCTCCAACAACAGTTATGATAACTACACGGCTCGGCAGGACTCGAGAAACTTGGTCACGGGGATCACTTCAGTAGGCTCGGTCGACTACTGA 2658 48.23 MRLSSAGFSPQNQEGEMKVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVVATTNKEVDSHIPNYPTLPPQLICQLHNVTMQADVETDEVYAQMTLQPLSPQEQKEAYLPVELGVPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPVQELIARDLHDNEWIFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFSIFYNPRASPSEFVIPLAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWRNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYSSPFPLRLKRPWPTGLPAFHGIKEDEVGLNSPLMWLRGDAGDLGIQSLNFPGVGVSPWMQPRLDASMLGMQSDMYQAMAAAALQEMRASDPSKLLQFQQTQSLPGRSPALLQTQMLQNSQPQQALLHSVQQNPHHTQSQSQTQSHVFQQQMHQKQPFSNQHQQQLVEHQIPSTISTISQFSTTSQPSSSSMQTLPSLCPQQSFSDSNVNPVSSSVISPLDSLLCSFPSDESTKLPNLARPNLLIPSSSWPSKRAAVDPLLSGTPQFVMSHLEHLGTSQANVPPNSISLPPFPLRDCTIDQGGTDPQGRLLFGVNIDHSTFLMQNGMSSLRGVGSEGDSSTLPFPSNYMSSAATDFSANTTMTPSCCIDDSGFMQPSENVGQVNPPMRTFVKVYMSGSFGRSLDITKFSSYHELRSELAQMFGIEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIRILSPQEVQEMGKRGLELLNSVPIQRLSNNSYDNYTARQDSRNLVTGITSVGSVDY 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22588261 22593531 - Bma025761.1 Bma07g00773 85910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00773 885 PANTHER AUXIN RESPONSE FACTOR 6 1 864 - -
Bma07g00773 885 MobiDBLite consensus disorder prediction 482 530 - -
Bma07g00773 885 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bma07g00773 885 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma07g00773 885 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 864 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma07g00773 885 SUPERFAMILY CAD & PB1 domains 743 829 - -
Bma07g00773 885 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bma07g00773 885 MobiDBLite consensus disorder prediction 543 568 - -
Bma07g00773 885 Gene3D - 291 363 - -
Bma07g00773 885 Pfam AUX/IAA family 749 841 IPR033389 -
Bma07g00773 885 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bma07g00773 885 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bma07g00773 885 Gene3D - 748 841 - -
Bma07g00773 885 ProSiteProfiles PB1 domain profile. 752 836 IPR000270 GO:0005515
Bma07g00773 885 Gene3D - 125 229 IPR015300 -
Bma07g00773 885 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00655 Bma-Chr7:10909727 Bma07g00773 Bma-Chr7:22588261 5.79E-35 dispersed
Bma07g00773 Bma-Chr7:22588261 Bma14g00953 Bma-Chr14:10844578 0 dispersed
Bma08g01153 Bma-Chr8:50555010 Bma07g00773 Bma-Chr7:22588261 2.58E-82 dispersed
Bma13g00299 Bma-Chr13:5364040 Bma07g00773 Bma-Chr7:22588261 4.06E-28 dispersed
Bma07g00773 Bma-Chr7:22588261 Bma14g01118 Bma-Chr14:14107748 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57627 PF02309 AUX_IAA 9.50E-10 CL0072 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00773 - - tcc:18596441 1353.19