Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00796 GCTGGATTAACAATCCAATTCGTGAAAAATGTTATAATTCATGGCCTTCGGATACACGATGTGGTCTCAAAACCAGGTGGAATGATAAGAGATTCCGTCGAACATTATGGGATAAGAACAGCCAGTGATGGAGATGGCATCTCCATTTTTGGAGCAACTAATGTTTGGCTTGATCATCTTTCCATGTGGAACTGCAAAGATGGATTGATCGACGCCGTTCAAGGATCAACTGCCATCACAGTCTCGAACTGTCACTTCACCAATCACAATGACGTGATGCTTTTTGGCGCGAGCGACTCGTACAAAGGGGACAAGATAATGCAGGTGACGGTGGCGTTCAACCATTTCGGGAAAGGATTAGTGCAGAGAATGCCGAGATGCCGATGGGGATTCTTCCACGTCGTGAACAACGACTATACCCACTGGCTTATGTACGCCATTGGAGGAAGCTCCCAACCCACCATTATCAGCCAAGGGAATCGTTTCATCGCGCCCCATAACCAGGCAGCGAAGGAGGTGACCAAGAGGGATTATGCCTCGAAAAGCGAGTGGAAGAACTGGACATGGAGGTCTCAGGGCGACTTTCTGAAGAATGGAGCTTTCTTCGTCCAATCAGGAAAGGCATTGAAGAAAAAGTCATTTGGTAGGCGCGAGATGATCAAGGCTAAGCCTGGAAAGTACGCGGAGAGGCTTACTCGCTTCTCTGGGTCGCTCAGCTGCAAGGTTGGCCGGCAATGTTAG 741 48.72 AGLTIQFVKNVIIHGLRIHDVVSKPGGMIRDSVEHYGIRTASDGDGISIFGATNVWLDHLSMWNCKDGLIDAVQGSTAITVSNCHFTNHNDVMLFGASDSYKGDKIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSSQPTIISQGNRFIAPHNQAAKEVTKRDYASKSEWKNWTWRSQGDFLKNGAFFVQSGKALKKKSFGRREMIKAKPGKYAERLTRFSGSLSCKVGRQC 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23965521 23966338 + Bma025801.1 Bma07g00796 85933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00796 246 Pfam Pectate lyase 7 162 IPR002022 -
Bma07g00796 246 PANTHER PECTATE LYASE 18-RELATED 1 246 IPR045032 GO:0030570
Bma07g00796 246 SMART amb_all 1 168 IPR002022 -
Bma07g00796 246 Gene3D - 1 239 IPR012334 -
Bma07g00796 246 PRINTS Pollen allergen Amb family signature 43 64 IPR018082 -
Bma07g00796 246 PRINTS Pollen allergen Amb family signature 145 164 IPR018082 -
Bma07g00796 246 PRINTS Pollen allergen Amb family signature 217 240 IPR018082 -
Bma07g00796 246 PRINTS Pollen allergen Amb family signature 123 142 IPR018082 -
Bma07g00796 246 PRINTS Pollen allergen Amb family signature 187 211 IPR018082 -
Bma07g00796 246 PANTHER PECTATE LYASE 1 246 - -
Bma07g00796 246 SUPERFAMILY Pectin lyase-like 2 240 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00796 Bma-Chr7:23965521 Bma06g00660 Bma-Chr6:35657954 1.61E-146 dispersed
Bma07g00796 Bma-Chr7:23965521 Bma02g00407 Bma-Chr2:6245887 9.47E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00796 K01728 - qsu:112023367 428.328