Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00816 ATGGCAGAAAATTCAGAAAGCAATGGAAATTATGGAGTGGCTTTGAATGTGAGAGATGAGGAAGCAAACGTCAACTGTTCATCATCCTTGCTCTTCTCCGTACCTTTCATACAAAAGATAATTGCAGAGGTGTTGGGGACATATTTTCTGATATTTGCAGGCTGTTCATCAGTTGTGGTGAATCTGAGTGAAGGCAAAGTTGTTTCTCTTCCTGGAATTTCAATCGTTTGGGGGCTTGCGGTGATGGTCATGGTCTACTCAGTCGGCCATATCTCCGGTGCTCATTTCAATCCGGCTGTCACCATTGCCTTTGCTTCTACCAAGAGATTCCCTTGGAAACAGGTACCTCCTTATGTATCAGCACAAATTGTTGGAGCAACCCTAGCAAGTGGTACCATTAGACTTTTATTTAACGAGAGAAACAGCGATTTTGCTCGAACACTTCCTTCCGGATCGCATGTTCAATCCCTTGTGATCGAATTCATAATCACTTTCGCTCTCATGTTCGTCATCTCTGGGGTTGCCACCGATAATAGAGCCATTGGTGAGCTGGCAGGTCTTGCAATTGGAGCAACGGTGGTTGTCAACGCGATGATTGCAGGGCCAATTTCTGGGGCGTCAATGAATCCAGCAAGAAGCTTAGCGCCTGCAATGGTGTTGAACAATTACAAAGGATTATGGATATACATAGTGGGTCCTACTCTTGGAGCAGTATGTGGAGCATGGGTCTACAACGTCATCAGATTTACCGATAAACCACTGCGAGAGATCACCAAAAGTAGCTCTTTCCTCAAAGGGTTGGGTAAAACTTGA 813 44.9 MAENSESNGNYGVALNVRDEEANVNCSSSLLFSVPFIQKIIAEVLGTYFLIFAGCSSVVVNLSEGKVVSLPGISIVWGLAVMVMVYSVGHISGAHFNPAVTIAFASTKRFPWKQVPPYVSAQIVGATLASGTIRLLFNERNSDFARTLPSGSHVQSLVIEFIITFALMFVISGVATDNRAIGELAGLAIGATVVVNAMIAGPISGASMNPARSLAPAMVLNNYKGLWIYIVGPTLGAVCGAWVYNVIRFTDKPLREITKSSSFLKGLGKT 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25810137 25815399 - Bma025848.1 Bma07g00816 85953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00816 270 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PANTHER AQUAPORIN NIP2-1 3 265 IPR034294 -
Bma07g00816 270 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Bma07g00816 270 Gene3D Glycerol uptake facilitator protein. 6 259 IPR023271 -
Bma07g00816 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma07g00816 270 PANTHER AQUAPORIN NIP1-1-RELATED 3 265 - -
Bma07g00816 270 SUPERFAMILY Aquaporin-like 31 258 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00816 Bma-Chr7:25810137 Bma13g00675 Bma-Chr13:17421809 2.08E-68 dispersed
Bma07g00816 Bma-Chr7:25810137 Bma10g00051 Bma-Chr10:539004 1.33E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00816 K09874 - mnt:21388091 399.053