Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00859 ATGGAGAGCTTTGGAGGTGGTGGTTATTTCGTCGACGACAAGGCTGCTCATGTCGAGAACATTTTCCTCGACTTTCTCAACAACTTTCGTCTCGGTGGCCGTTCAGGGGAAGCCTATTACGATGCTGAGATTGAAGCTATGAAGGCCTCTGAATCCACCACCATGTTCATCGATTTCTCTCATCTCATCCGCTTCAACGATCTCCTTCACTTTGCTATCTCTGAAGAATACTTGAGGTTTGAACGCTACTTGAAGAATGCTTGCAAGCGATTCGTGATGGAAAAGAAGCCCACCTTCATAGCTGATGATAACCTTGGCAAGGACATCAATGTTGCTTTTTTTAACATCCCCGTTTGTAAGAGGTTGAGGGAGTTGACTACAGCAGAAATTGGCAAATTAGTGTCAGTGACAGGAGTTGTAACTCGTACAAGTGAGGTTCGACCAGAACTTCTCCAAGGGACCTTTAAGTGTCTTACATGTGGAGGTGTGATAAAGAACATTGAACAGCAGTTCAAGTATACAGAGCCAACAATTTGCATGGGTCCTACATGTACAAATAGAACGAAATGGGCATTACTGCGGCAAGAGAGCAAATTTGCTGATTGGCAAAGGGTGCGAATGCAAGAGACTTCCAAGGAGATACCAGCAGGATCTCTTCCTCGATCATTGGATGTCATTCTTCGTCATGAGATGGTCGAGCGAGCCAGGGCCGGAGACACGGTTGTTTTTACGGGTACAGTGGTTGTGATACCAGACATACTTGCACTGGCCTCTCCTGGTGAGAGAGCAGAAACTCGACGAGAAGGTTCCCAACGGCAAAGTTCTACTGTTGGACATGATGGAGTGAGAGGCCTTAAAGCTCTAGGAGTGAGAGACCTGTCATATCGATTAGCTTTTATTGCCAATTCAGTTCAAATTGCTGAAGATAGGAGAGACACTGATGTCAGGAATAGGAAAAGGGAAAGTGATGAAGAACAACAATTTACAGCGGAAGAGCTTGACGAAGTCCAAAGGATGAGGAATACGCCAGATTTCTTAAATAAACTTGTTGAGAGTATTGCACCAACAGTCTTTGGTCACCAAGATATCAAGCGAGCTATCTTGCTTATGCTCCTAGGTGGAGTTCACAAGCATACTCATGAAGGCATCAATCTGAGAGGAGATATTAATGTTTGCATCGTAGGAGATCCAAGCTGTGCAAAATCTCAATTCCTGAAGTACACGTCAGGTATAGTTCCAAGATCTGTTTATACATCTGGGAAATCCTCTTCAGCGGCAGGGTTGACTGCAACTGTGGCAAAAGAACCTGAAACTGGGGAATTTTGTATTGAGGCCGGTGCTTTAATGCTTGCTGACAACGGGATTTGTTGCATTGATGAATTTGATAAAATGGATATTAGGGATCAGGTTGCAATTCATGAAGCGATGGAACAGCAAACTATAAGCATTACCAAAGCTGGAATACAAGCAACACTGAATGCTCGTACATCAATTCTGGCTGCTGCTAATCCTGCAGGTGGACGGTACGACAAGTCTAAACCATTGAAGTATAATGTGGCTCTTCCTCCTGCCATTCTCTCAAGGTTTGACCTGGTATACGTTATGATTGATGATCCAGATGATCAAACAGATTACCATATTGCCCACCACATCGTCAGAGTACATCAGAAGCGTGAAAATGCTCTTTCTCCGGCATTTTCTACTGCAGAGCTTAAGAGATATTTTGCATATGCAAAAACTTTAAAACCCAAGCTAAGCTCAGATGCGAGGAAATTGTTGGTCGACTCTTATGTTGCTTTACGTAGAGGAGATACCACTCCTGGCAGTAGAGTTGCATATCGCATGACTGTTAGACAACTTGAGGCATTGATCAGACTATCTGAAGCCATTGCTCGAAGTTATTTGGAAACTCTGGTGCATACATGTTTTGACAAATTTCATTCACTAGTATTTGATATCTCATTATGGAATATACTCAAAAAGACATGCACGCAGTCCAGTGAGATTGATCTCTCGGAGTTTCAAGAAGAAAACAATGTTGTTGACAATAATGTAGATAGGGCGGATGGTGATGCTAACCAAGATGATTCTCAACCAAGCAATGATCCAGTTTCAGGAAACGAAATTGGTTTTGCAGCTGCAAATCGAGAAGGAAGAAAACTTGTTCTAAGCGATGAATATTTTCAGCGGATCACCCAAGCCCTCATTATGCACCTTAGGCAGCATGAAGAAACTGTAATGCAAGAAGGAACTGGGCTGGCAGGAATGAGACAGAGGGACTTGATTAAATGGTATGTAGATCAGCAGCATGCGAAAAATAAATATAGCTCCGAGGTGGAGGTTATAAACGAAGTGTCTAACATTAAAGCTATTATAGAGAGTTTAATACTAAGGCAAGGGCATTTGATAGTGGTGGACGATGGCAGGCCAGTTACAGAGGGTGAAGTTGCTGGACAATCATCAAGTAGAAATGACAGAATTTTGGCTGTTGCTCCTAATTATGTCATTCATTGA 2514 42.92 MESFGGGGYFVDDKAAHVENIFLDFLNNFRLGGRSGEAYYDAEIEAMKASESTTMFIDFSHLIRFNDLLHFAISEEYLRFERYLKNACKRFVMEKKPTFIADDNLGKDINVAFFNIPVCKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLTCGGVIKNIEQQFKYTEPTICMGPTCTNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVVFTGTVVVIPDILALASPGERAETRREGSQRQSSTVGHDGVRGLKALGVRDLSYRLAFIANSVQIAEDRRDTDVRNRKRESDEEQQFTAEELDEVQRMRNTPDFLNKLVESIAPTVFGHQDIKRAILLMLLGGVHKHTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKRENALSPAFSTAELKRYFAYAKTLKPKLSSDARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVHTCFDKFHSLVFDISLWNILKKTCTQSSEIDLSEFQEENNVVDNNVDRADGDANQDDSQPSNDPVSGNEIGFAAANREGRKLVLSDEYFQRITQALIMHLRQHEETVMQEGTGLAGMRQRDLIKWYVDQQHAKNKYSSEVEVINEVSNIKAIIESLILRQGHLIVVDDGRPVTEGEVAGQSSSRNDRILAVAPNYVIH 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29648638 29655466 - Bma025918.1 Bma07g00859 85996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 386 401 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 474 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 498 510 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 446 460 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 533 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 Pfam MCM OB domain 122 250 IPR033762 -
Bma07g00859 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 11 789 - -
Bma07g00859 837 MobiDBLite consensus disorder prediction 684 708 - -
Bma07g00859 837 ProSitePatterns MCM family signature. 454 462 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bma07g00859 837 Gene3D - 149 200 - -
Bma07g00859 837 Pfam MCM AAA-lid domain 570 640 IPR041562 -
Bma07g00859 837 Pfam MCM N-terminal domain 21 115 IPR027925 -
Bma07g00859 837 Gene3D - 717 837 - -
Bma07g00859 837 SMART mcm 118 655 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 MobiDBLite consensus disorder prediction 259 278 - -
Bma07g00859 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 633 IPR027417 -
Bma07g00859 837 Gene3D - 122 250 IPR012340 -
Bma07g00859 837 Pfam MCM P-loop domain 333 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 11 789 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 Gene3D - 10 118 - -
Bma07g00859 837 ProSiteProfiles MCM family domain profile. 345 551 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma07g00859 837 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma07g00859 837 Gene3D - 323 642 IPR027417 -
Bma07g00859 837 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
Bma07g00859 837 CDD MCM6 348 639 - -
Bma07g00859 837 Pfam MCM6 C-terminal winged-helix domain 720 836 IPR041024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00859 Bma-Chr7:29648638 Bma15g00493 Bma-Chr15:5716328 1.20E-113 dispersed
Bma07g00859 Bma-Chr7:29648638 Bma03g00566 Bma-Chr3:4689080 3.89E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00859 K02542 - jre:108993888 1297.34