Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bma07g00859	ATGGAGAGCTTTGGAGGTGGTGGTTATTTCGTCGACGACAAGGCTGCTCATGTCGAGAACATTTTCCTCGACTTTCTCAACAACTTTCGTCTCGGTGGCCGTTCAGGGGAAGCCTATTACGATGCTGAGATTGAAGCTATGAAGGCCTCTGAATCCACCACCATGTTCATCGATTTCTCTCATCTCATCCGCTTCAACGATCTCCTTCACTTTGCTATCTCTGAAGAATACTTGAGGTTTGAACGCTACTTGAAGAATGCTTGCAAGCGATTCGTGATGGAAAAGAAGCCCACCTTCATAGCTGATGATAACCTTGGCAAGGACATCAATGTTGCTTTTTTTAACATCCCCGTTTGTAAGAGGTTGAGGGAGTTGACTACAGCAGAAATTGGCAAATTAGTGTCAGTGACAGGAGTTGTAACTCGTACAAGTGAGGTTCGACCAGAACTTCTCCAAGGGACCTTTAAGTGTCTTACATGTGGAGGTGTGATAAAGAACATTGAACAGCAGTTCAAGTATACAGAGCCAACAATTTGCATGGGTCCTACATGTACAAATAGAACGAAATGGGCATTACTGCGGCAAGAGAGCAAATTTGCTGATTGGCAAAGGGTGCGAATGCAAGAGACTTCCAAGGAGATACCAGCAGGATCTCTTCCTCGATCATTGGATGTCATTCTTCGTCATGAGATGGTCGAGCGAGCCAGGGCCGGAGACACGGTTGTTTTTACGGGTACAGTGGTTGTGATACCAGACATACTTGCACTGGCCTCTCCTGGTGAGAGAGCAGAAACTCGACGAGAAGGTTCCCAACGGCAAAGTTCTACTGTTGGACATGATGGAGTGAGAGGCCTTAAAGCTCTAGGAGTGAGAGACCTGTCATATCGATTAGCTTTTATTGCCAATTCAGTTCAAATTGCTGAAGATAGGAGAGACACTGATGTCAGGAATAGGAAAAGGGAAAGTGATGAAGAACAACAATTTACAGCGGAAGAGCTTGACGAAGTCCAAAGGATGAGGAATACGCCAGATTTCTTAAATAAACTTGTTGAGAGTATTGCACCAACAGTCTTTGGTCACCAAGATATCAAGCGAGCTATCTTGCTTATGCTCCTAGGTGGAGTTCACAAGCATACTCATGAAGGCATCAATCTGAGAGGAGATATTAATGTTTGCATCGTAGGAGATCCAAGCTGTGCAAAATCTCAATTCCTGAAGTACACGTCAGGTATAGTTCCAAGATCTGTTTATACATCTGGGAAATCCTCTTCAGCGGCAGGGTTGACTGCAACTGTGGCAAAAGAACCTGAAACTGGGGAATTTTGTATTGAGGCCGGTGCTTTAATGCTTGCTGACAACGGGATTTGTTGCATTGATGAATTTGATAAAATGGATATTAGGGATCAGGTTGCAATTCATGAAGCGATGGAACAGCAAACTATAAGCATTACCAAAGCTGGAATACAAGCAACACTGAATGCTCGTACATCAATTCTGGCTGCTGCTAATCCTGCAGGTGGACGGTACGACAAGTCTAAACCATTGAAGTATAATGTGGCTCTTCCTCCTGCCATTCTCTCAAGGTTTGACCTGGTATACGTTATGATTGATGATCCAGATGATCAAACAGATTACCATATTGCCCACCACATCGTCAGAGTACATCAGAAGCGTGAAAATGCTCTTTCTCCGGCATTTTCTACTGCAGAGCTTAAGAGATATTTTGCATATGCAAAAACTTTAAAACCCAAGCTAAGCTCAGATGCGAGGAAATTGTTGGTCGACTCTTATGTTGCTTTACGTAGAGGAGATACCACTCCTGGCAGTAGAGTTGCATATCGCATGACTGTTAGACAACTTGAGGCATTGATCAGACTATCTGAAGCCATTGCTCGAAGTTATTTGGAAACTCTGGTGCATACATGTTTTGACAAATTTCATTCACTAGTATTTGATATCTCATTATGGAATATACTCAAAAAGACATGCACGCAGTCCAGTGAGATTGATCTCTCGGAGTTTCAAGAAGAAAACAATGTTGTTGACAATAATGTAGATAGGGCGGATGGTGATGCTAACCAAGATGATTCTCAACCAAGCAATGATCCAGTTTCAGGAAACGAAATTGGTTTTGCAGCTGCAAATCGAGAAGGAAGAAAACTTGTTCTAAGCGATGAATATTTTCAGCGGATCACCCAAGCCCTCATTATGCACCTTAGGCAGCATGAAGAAACTGTAATGCAAGAAGGAACTGGGCTGGCAGGAATGAGACAGAGGGACTTGATTAAATGGTATGTAGATCAGCAGCATGCGAAAAATAAATATAGCTCCGAGGTGGAGGTTATAAACGAAGTGTCTAACATTAAAGCTATTATAGAGAGTTTAATACTAAGGCAAGGGCATTTGATAGTGGTGGACGATGGCAGGCCAGTTACAGAGGGTGAAGTTGCTGGACAATCATCAAGTAGAAATGACAGAATTTTGGCTGTTGCTCCTAATTATGTCATTCATTGA	2514	42.92	MESFGGGGYFVDDKAAHVENIFLDFLNNFRLGGRSGEAYYDAEIEAMKASESTTMFIDFSHLIRFNDLLHFAISEEYLRFERYLKNACKRFVMEKKPTFIADDNLGKDINVAFFNIPVCKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLTCGGVIKNIEQQFKYTEPTICMGPTCTNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVVFTGTVVVIPDILALASPGERAETRREGSQRQSSTVGHDGVRGLKALGVRDLSYRLAFIANSVQIAEDRRDTDVRNRKRESDEEQQFTAEELDEVQRMRNTPDFLNKLVESIAPTVFGHQDIKRAILLMLLGGVHKHTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKRENALSPAFSTAELKRYFAYAKTLKPKLSSDARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVHTCFDKFHSLVFDISLWNILKKTCTQSSEIDLSEFQEENNVVDNNVDRADGDANQDDSQPSNDPVSGNEIGFAAANREGRKLVLSDEYFQRITQALIMHLRQHEETVMQEGTGLAGMRQRDLIKWYVDQQHAKNKYSSEVEVINEVSNIKAIIESLILRQGHLIVVDDGRPVTEGEVAGQSSSRNDRILAVAPNYVIH	837

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
7	29648638	29655466	-	Bma025918.1	Bma07g00859	85996

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	386	401	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	474	487	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	498	510	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	446	460	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	525	533	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	Pfam	MCM OB domain	122	250	IPR033762	-
Bma07g00859	837	PANTHER	DNA REPLICATION LICENSING FACTOR MCM6	11	789	-	-
Bma07g00859	837	MobiDBLite	consensus disorder prediction	684	708	-	-
Bma07g00859	837	ProSitePatterns	MCM family signature.	454	462	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
Bma07g00859	837	Gene3D	-	149	200	-	-
Bma07g00859	837	Pfam	MCM AAA-lid domain	570	640	IPR041562	-
Bma07g00859	837	Pfam	MCM N-terminal domain	21	115	IPR027925	-
Bma07g00859	837	Gene3D	-	717	837	-	-
Bma07g00859	837	SMART	mcm	118	655	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	MobiDBLite	consensus disorder prediction	259	278	-	-
Bma07g00859	837	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	355	633	IPR027417	-
Bma07g00859	837	Gene3D	-	122	250	IPR012340	-
Bma07g00859	837	Pfam	MCM P-loop domain	333	555	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	11	789	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	Gene3D	-	10	118	-	-
Bma07g00859	837	ProSiteProfiles	MCM family domain profile.	345	551	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	169	186	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	281	302	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	119	131	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Bma07g00859	837	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	222	233	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
Bma07g00859	837	Gene3D	-	323	642	IPR027417	-
Bma07g00859	837	SUPERFAMILY	Nucleic acid-binding proteins	22	252	IPR012340	-
Bma07g00859	837	CDD	MCM6	348	639	-	-
Bma07g00859	837	Pfam	MCM6 C-terminal winged-helix domain	720	836	IPR041024	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bma07g00859	K02542	MCM6; DNA replication licensing factor MCM6 [EC:5.6.2.3]	-	jre:108993888	1297.34

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bma07g00859	Bma-Chr7:29648638	Bma15g00493	Bma-Chr15:5716328	1.20E-113	dispersed
	Bma07g00859	Bma-Chr7:29648638	Bma03g00566	Bma-Chr3:4689080	3.89E-99	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi2g811	.	.	.	.	.	.	Bma07g00859	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Bma14g00768	.	145	883	Core DNA Replication Machinery Family	AT4G14700	65.9	6.9e-281	963.4
Bma14g00768	.	80	883	Core DNA Replication Machinery Family	AT4G12620	63.2	4.5e-288	987.3
Bma05g00078	.	7	368	Core DNA Replication Machinery Family	AT2G37560	64.9	1.4e-134	476.1
Bma05g00061	.	7	360	Core DNA Replication Machinery Family	AT2G37560	65.8	1.8e-132	469.2
Bma11g00406	.	7	279	Core DNA Replication Machinery Family	AT2G37560	54.3	4.1e-97	351.7
Bma01g00448	.	1	415	Core DNA Replication Machinery Family	AT2G01120	61.1	1.2e-138	490.0
Bma01g00093	.	1	319	Core DNA Replication Machinery Family	AT1G26840	59.9	1.0e-93	340.1
Bma12g00588	.	1	799	Core DNA Replication Machinery Family	AT1G79150	55.6	8.0e-232	800.4
Bma07g01373	.	1	940	Core DNA Replication Machinery Family	AT1G44900	76.2	0.0e+00	1368.6
Bma03g00566	BCT	4	728	Core DNA Replication Machinery Family	AT2G16440	73.9	5.4e-313	1070.1
Bma01g00291	.	936	1699	Core DNA Replication Machinery Family	AT2G07690	74.1	0.0e+00	1086.6
Bma07g00859	.	1	836	Core DNA Replication Machinery Family	AT5G44635	70.2	0.0e+00	1139.4
Bma15g00493	CCT	18	722	Core DNA Replication Machinery Family	AT4G02060	84.0	0.0e+00	1188.7
Bma11g00084	.	40	509	Core DNA Replication Machinery Family	AT2G29680	57.2	5.2e-149	524.6
Bma11g00084	.	1	479	Core DNA Replication Machinery Family	AT1G07270	54.6	6.1e-136	481.1
Bma12g00066	.	1	594	Core DNA Replication Machinery Family	AT3G25100	77.1	8.2e-255	876.3
Bma09g00801	.	3	596	Core DNA Replication Machinery Family	AT3G25100	76.8	7.7e-253	869.8
Bma15g00665	.	1	594	Core DNA Replication Machinery Family	AT3G25100	76.6	2.2e-252	868.2
Bma04g01647	.	22	728	Core DNA Replication Machinery Family	AT3G09660	60.8	6.2e-250	860.5
Bma10g01097	CCT	1	610	Core DNA Replication Machinery Family	AT2G14050	76.2	1.2e-270	929.1
Bma03g01547	.	1	246	Core DNA Replication Machinery Family	AT2G14050	74.9	3.2e-95	346.3
Bma03g01549	.	9	260	Core DNA Replication Machinery Family	AT2G14050	56.9	7.4e-76	282.0
Bma05g00365	.	6	353	Core DNA Replication Machinery Family	AT2G20980	54.6	5.2e-104	374.8
Bma15g00229	.	1	228	Core DNA Replication Machinery Family	AT1G77320	71.9	2.9e-95	347.1
Bma13g00787	.	1	191	Core DNA Replication Machinery Family	AT1G80190	69.1	7.5e-75	276.9
Bma14g00519	.	2	192	Core DNA Replication Machinery Family	AT1G80190	69.1	1.7e-74	275.8
Bma14g00698	.	2	192	Core DNA Replication Machinery Family	AT1G80190	68.0	1.1e-73	273.1
Bma08g00026	.	1	191	Core DNA Replication Machinery Family	AT1G80190	67.5	3.1e-73	271.6
Bma05g00599	.	1	145	Core DNA Replication Machinery Family	AT3G12530	71.0	4.3e-59	224.2
Bma07g00894	.	1	145	Core DNA Replication Machinery Family	AT3G12530	71.0	4.3e-59	224.2
Bma08g01083	.	1	182	Core DNA Replication Machinery Family	AT1G19080	65.9	6.2e-68	253.8
Bma08g01083	.	1	182	Core DNA Replication Machinery Family	AT3G55490	65.9	6.2e-68	253.8
Bma02g00932	.	15	163	Core DNA Replication Machinery Family	AT5G49010	64.0	1.5e-48	189.5
Bma15g00244	.	2	617	Core DNA Replication Machinery Family	AT1G67630	60.1	2.4e-217	751.9
Bma05g01138	.	1	447	Core DNA Replication Machinery Family	AT1G67320	65.7	7.1e-188	653.7
Bma05g00872	.	1	453	Core DNA Replication Machinery Family	AT5G41880	65.3	7.8e-181	630.2
Bma09g00431	.	27	1152	Core DNA Replication Machinery Family	AT5G63960	74.7	0.0e+00	1696.8
Bma10g00174	.	4	437	Core DNA Replication Machinery Family	AT2G42120	76.0	1.4e-198	689.1
Bma05g01138	.	1	447	Core DNA Replication Machinery Family	AT1G67320	65.7	7.1e-188	653.7
Bma11g00219	.	2	1474	Core DNA Replication Machinery Family	AT1G08260	76.5	0.0e+00	2272.7
Bma11g00219	.	23	1474	Core DNA Replication Machinery Family	AT2G27120	74.1	0.0e+00	2150.6
Bma12g01277	.	7	486	Core DNA Replication Machinery Family	AT5G22110	70.3	1.6e-195	679.1
Bma03g00647	.	22	198	Core DNA Replication Machinery Family	AT5G22110	56.8	1.2e-54	211.1
Bma07g00220	.	7	911	Core DNA Replication Machinery Family	AT5G22010	63.0	1.1e-287	986.1
Bma05g00808	.	3	332	Core DNA Replication Machinery Family	AT1G63160	89.7	4.6e-170	594.0
Bma01g02668	BCT	1	354	Core DNA Replication Machinery Family	AT5G27740	85.0	1.4e-177	619.0
Bma01g01795	.	1	354	Core DNA Replication Machinery Family	AT5G27740	85.0	2.4e-177	618.2
Bma04g00016	BCT	1	336	Core DNA Replication Machinery Family	AT1G21690	81.3	1.5e-152	535.8
Bma02g00213	BCT	1	339	Core DNA Replication Machinery Family	AT1G77470	71.4	6.2e-144	507.3
Bma01g00807	BCT	1	283	Core DNA Replication Machinery Family	AT1G77470	57.4	1.3e-93	340.1
Bma06g00893	.	1	450	Core DNA Replication Machinery Family	AT2G06510	77.2	3.3e-214	741.5
Bma12g00253	.	2	454	Core DNA Replication Machinery Family	AT2G06510	65.5	1.9e-185	646.0
Bma12g00964	CCT	1	625	Core DNA Replication Machinery Family	AT5G08020	66.9	2.1e-242	835.1
Bma08g00242	CCT	1	591	Core DNA Replication Machinery Family	AT5G08020	62.5	1.0e-220	763.1
Bma12g00253	.	1	558	Core DNA Replication Machinery Family	AT5G45400	62.8	2.4e-207	719.2
Bma06g00893	.	3	453	Core DNA Replication Machinery Family	AT5G45400	63.0	6.8e-170	594.7
Bma12g00964	CCT	1	624	Core DNA Replication Machinery Family	AT5G61000	64.8	6.2e-237	817.0
Bma08g00242	CCT	1	585	Core DNA Replication Machinery Family	AT5G61000	61.7	9.4e-217	750.0
Bma12g00253	.	2	579	Core DNA Replication Machinery Family	AT4G19130	60.7	7.9e-205	710.7
Bma06g00893	.	3	453	Core DNA Replication Machinery Family	AT4G19130	60.3	2.3e-164	576.2
Bma01g00646	.	1	361	Core DNA Replication Machinery Family	AT5G26680	83.9	7.4e-178	620.2
Bma02g01168	.	1	1131	Core DNA Replication Machinery Family	AT1G08840	50.7	1.5e-288	989.2
Bma08g00918	.	1	295	Core DNA Replication Machinery Family	AT2G25100	68.2	1.6e-115	412.5
Bma08g00503	.	1	239	Core DNA Replication Machinery Family	AT2G25100	72.4	1.0e-98	356.7
Bma07g00168	.	46	802	Core DNA Replication Machinery Family	AT1G08130	67.6	1.4e-286	982.2
Bma07g00168	.	209	802	Core DNA Replication Machinery Family	AT1G49250	66.8	7.0e-231	797.0

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0007427	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	6	1	2	1	1	0	1	0	33

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bma07g00859	Bma_Chr07	FPKM	13.901282	14.058953	14.208473	13.305177	10.084392	9.03261	10.178777	4.189964	4.630154	4.484418