Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma07g00859 | ATGGAGAGCTTTGGAGGTGGTGGTTATTTCGTCGACGACAAGGCTGCTCATGTCGAGAACATTTTCCTCGACTTTCTCAACAACTTTCGTCTCGGTGGCCGTTCAGGGGAAGCCTATTACGATGCTGAGATTGAAGCTATGAAGGCCTCTGAATCCACCACCATGTTCATCGATTTCTCTCATCTCATCCGCTTCAACGATCTCCTTCACTTTGCTATCTCTGAAGAATACTTGAGGTTTGAACGCTACTTGAAGAATGCTTGCAAGCGATTCGTGATGGAAAAGAAGCCCACCTTCATAGCTGATGATAACCTTGGCAAGGACATCAATGTTGCTTTTTTTAACATCCCCGTTTGTAAGAGGTTGAGGGAGTTGACTACAGCAGAAATTGGCAAATTAGTGTCAGTGACAGGAGTTGTAACTCGTACAAGTGAGGTTCGACCAGAACTTCTCCAAGGGACCTTTAAGTGTCTTACATGTGGAGGTGTGATAAAGAACATTGAACAGCAGTTCAAGTATACAGAGCCAACAATTTGCATGGGTCCTACATGTACAAATAGAACGAAATGGGCATTACTGCGGCAAGAGAGCAAATTTGCTGATTGGCAAAGGGTGCGAATGCAAGAGACTTCCAAGGAGATACCAGCAGGATCTCTTCCTCGATCATTGGATGTCATTCTTCGTCATGAGATGGTCGAGCGAGCCAGGGCCGGAGACACGGTTGTTTTTACGGGTACAGTGGTTGTGATACCAGACATACTTGCACTGGCCTCTCCTGGTGAGAGAGCAGAAACTCGACGAGAAGGTTCCCAACGGCAAAGTTCTACTGTTGGACATGATGGAGTGAGAGGCCTTAAAGCTCTAGGAGTGAGAGACCTGTCATATCGATTAGCTTTTATTGCCAATTCAGTTCAAATTGCTGAAGATAGGAGAGACACTGATGTCAGGAATAGGAAAAGGGAAAGTGATGAAGAACAACAATTTACAGCGGAAGAGCTTGACGAAGTCCAAAGGATGAGGAATACGCCAGATTTCTTAAATAAACTTGTTGAGAGTATTGCACCAACAGTCTTTGGTCACCAAGATATCAAGCGAGCTATCTTGCTTATGCTCCTAGGTGGAGTTCACAAGCATACTCATGAAGGCATCAATCTGAGAGGAGATATTAATGTTTGCATCGTAGGAGATCCAAGCTGTGCAAAATCTCAATTCCTGAAGTACACGTCAGGTATAGTTCCAAGATCTGTTTATACATCTGGGAAATCCTCTTCAGCGGCAGGGTTGACTGCAACTGTGGCAAAAGAACCTGAAACTGGGGAATTTTGTATTGAGGCCGGTGCTTTAATGCTTGCTGACAACGGGATTTGTTGCATTGATGAATTTGATAAAATGGATATTAGGGATCAGGTTGCAATTCATGAAGCGATGGAACAGCAAACTATAAGCATTACCAAAGCTGGAATACAAGCAACACTGAATGCTCGTACATCAATTCTGGCTGCTGCTAATCCTGCAGGTGGACGGTACGACAAGTCTAAACCATTGAAGTATAATGTGGCTCTTCCTCCTGCCATTCTCTCAAGGTTTGACCTGGTATACGTTATGATTGATGATCCAGATGATCAAACAGATTACCATATTGCCCACCACATCGTCAGAGTACATCAGAAGCGTGAAAATGCTCTTTCTCCGGCATTTTCTACTGCAGAGCTTAAGAGATATTTTGCATATGCAAAAACTTTAAAACCCAAGCTAAGCTCAGATGCGAGGAAATTGTTGGTCGACTCTTATGTTGCTTTACGTAGAGGAGATACCACTCCTGGCAGTAGAGTTGCATATCGCATGACTGTTAGACAACTTGAGGCATTGATCAGACTATCTGAAGCCATTGCTCGAAGTTATTTGGAAACTCTGGTGCATACATGTTTTGACAAATTTCATTCACTAGTATTTGATATCTCATTATGGAATATACTCAAAAAGACATGCACGCAGTCCAGTGAGATTGATCTCTCGGAGTTTCAAGAAGAAAACAATGTTGTTGACAATAATGTAGATAGGGCGGATGGTGATGCTAACCAAGATGATTCTCAACCAAGCAATGATCCAGTTTCAGGAAACGAAATTGGTTTTGCAGCTGCAAATCGAGAAGGAAGAAAACTTGTTCTAAGCGATGAATATTTTCAGCGGATCACCCAAGCCCTCATTATGCACCTTAGGCAGCATGAAGAAACTGTAATGCAAGAAGGAACTGGGCTGGCAGGAATGAGACAGAGGGACTTGATTAAATGGTATGTAGATCAGCAGCATGCGAAAAATAAATATAGCTCCGAGGTGGAGGTTATAAACGAAGTGTCTAACATTAAAGCTATTATAGAGAGTTTAATACTAAGGCAAGGGCATTTGATAGTGGTGGACGATGGCAGGCCAGTTACAGAGGGTGAAGTTGCTGGACAATCATCAAGTAGAAATGACAGAATTTTGGCTGTTGCTCCTAATTATGTCATTCATTGA | 2514 | 42.92 | MESFGGGGYFVDDKAAHVENIFLDFLNNFRLGGRSGEAYYDAEIEAMKASESTTMFIDFSHLIRFNDLLHFAISEEYLRFERYLKNACKRFVMEKKPTFIADDNLGKDINVAFFNIPVCKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLTCGGVIKNIEQQFKYTEPTICMGPTCTNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVVFTGTVVVIPDILALASPGERAETRREGSQRQSSTVGHDGVRGLKALGVRDLSYRLAFIANSVQIAEDRRDTDVRNRKRESDEEQQFTAEELDEVQRMRNTPDFLNKLVESIAPTVFGHQDIKRAILLMLLGGVHKHTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKRENALSPAFSTAELKRYFAYAKTLKPKLSSDARKLLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVHTCFDKFHSLVFDISLWNILKKTCTQSSEIDLSEFQEENNVVDNNVDRADGDANQDDSQPSNDPVSGNEIGFAAANREGRKLVLSDEYFQRITQALIMHLRQHEETVMQEGTGLAGMRQRDLIKWYVDQQHAKNKYSSEVEVINEVSNIKAIIESLILRQGHLIVVDDGRPVTEGEVAGQSSSRNDRILAVAPNYVIH | 837 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29648638 | 29655466 | - | Bma025918.1 | Bma07g00859 | 85996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 386 | 401 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 487 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 498 | 510 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 446 | 460 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 533 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | Pfam | MCM OB domain | 122 | 250 | IPR033762 | - | |
Bma07g00859 | 837 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 11 | 789 | - | - | |
Bma07g00859 | 837 | MobiDBLite | consensus disorder prediction | 684 | 708 | - | - | |
Bma07g00859 | 837 | ProSitePatterns | MCM family signature. | 454 | 462 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Bma07g00859 | 837 | Gene3D | - | 149 | 200 | - | - | |
Bma07g00859 | 837 | Pfam | MCM AAA-lid domain | 570 | 640 | IPR041562 | - | |
Bma07g00859 | 837 | Pfam | MCM N-terminal domain | 21 | 115 | IPR027925 | - | |
Bma07g00859 | 837 | Gene3D | - | 717 | 837 | - | - | |
Bma07g00859 | 837 | SMART | mcm | 118 | 655 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | MobiDBLite | consensus disorder prediction | 259 | 278 | - | - | |
Bma07g00859 | 837 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 633 | IPR027417 | - | |
Bma07g00859 | 837 | Gene3D | - | 122 | 250 | IPR012340 | - | |
Bma07g00859 | 837 | Pfam | MCM P-loop domain | 333 | 555 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 11 | 789 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | Gene3D | - | 10 | 118 | - | - | |
Bma07g00859 | 837 | ProSiteProfiles | MCM family domain profile. | 345 | 551 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 169 | 186 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 281 | 302 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 119 | 131 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
Bma07g00859 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 222 | 233 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
Bma07g00859 | 837 | Gene3D | - | 323 | 642 | IPR027417 | - | |
Bma07g00859 | 837 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 252 | IPR012340 | - | |
Bma07g00859 | 837 | CDD | MCM6 | 348 | 639 | - | - | |
Bma07g00859 | 837 | Pfam | MCM6 C-terminal winged-helix domain | 720 | 836 | IPR041024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00859 | Bma-Chr7:29648638 | Bma15g00493 | Bma-Chr15:5716328 | 1.20E-113 | dispersed | |
Bma07g00859 | Bma-Chr7:29648638 | Bma03g00566 | Bma-Chr3:4689080 | 3.89E-99 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma07g00859 | K02542 | - | jre:108993888 | 1297.34 |