Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma07g00880 | ATGGCCCGGAGTTTTGGAGGCCTTCAGCTTACGCAGGTCGCCTCCGATGGCCGCGGACCCCATTCTCTCGTCTCCGGTGATTTGTCGGACGATCTCGAGGATGTGCGTCTTCTTGATTCGTATGAGGGCAGTGAGCGTGATTTGGGAAAACTTGAAGATGGTATGAAGAGGGTTCAGGTCAGAGTTTCCGGCATGACTTGTGCCGCCTGCTCTAATTCTGTGGAGGGAGCTTTGAGGAGCGTGCATGGAGTTTTGCGTGCCTCTGTTGCATTGCTTCAGAATAAGGCGGATGTGATTTTCGATCCTAATTTTGTTAAGGATAATGACATAAAAACCGCAATTGAAGATGCTGGATTTGAAGCAGAGATACTACCTGAAACCAGTGGAGCAAAACCACACGGAACCCTGTTGGGACAGTTCTCTATAGGAGGGATGACATGTGCAGCCTGTGTTAACTCTGTTGAAGGAATTTTGAGAAATCTTCCTGGTGTCAAAAGGGCAGTGGTAGCCTTAGCTACTTCTTTAGGGGAAGTTGAGTATGATTCGACTGTAATCAGTAAAGGTGAAATAGTTGAAGCTATAGAAGATGCAGGCTTTGAAGCTTCATTTGTACGCAGCAGTGAGCAGGATAAAATATTACTGGGGGTTTCTGGTGTACTTTCTGAGATAGATGCACAACTTTTGGAAGGTGTGCTTATCAATCTGCAAGGGGTGAGACAGTTTCTTTTTGACAGGACATCAAGAGAATTGGAAGTTCTTTTTGACCCTGAGGTTGTCAAGCCTAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAATGGGAAGTTTAAAGTACATGTCGTGAGCCCCTACTGTAGAATTACCAGCAAAGATGTTGAAGAAACCTCAACTATGTTTCGGCTATTCACATCCAGTTTGTTTCTTAGTATTCCAGTCTTTTTTATTCGGGTAATATGTCCACACATACCTCTTTTATATTCATTGATACTCCAGCGATGCGGGCCATTCCTTATGGGAGATTGGTTGAAGTGGGCACTGGTGAGTGTAGTACAATTTGTGATTGGGAAGCGATTCTATCTTGCGGCTTTTAGAGCTCTTCGAAATGGTTCAACGAACATGGATGTATTAGTTGCCTTGGGCACTTCAGCCTCTTACTTCTACTCTGTTTATGCACTTCTATATGGGGCAATTACTCATTTTTGGTCTCCAACATATTTTGAAACGAGTTCCATGCTAATTACATTTGTATTGTTTGGAAAGTATTTGGAGTGTCTTGCTAAAAGAAAAACGTCAGATGCCATAAAGAAGCTGGTAGAACTTGCCCCTGCAACAGCTCTATTGGTTGTCAAAGATAAAGGTGGGAAGTTGATTGGAGAAAGATTAATAGATGCTTTGCTTATTCAACCTGGTGACATATTAAAAGTTCTTCCTGGTTCAAAGATTCCTGCTGATGGTGTGGTTGTCTGGGGATCAAGTCATGTTAACGAAAGCATGGTAACTGGTGAATCTATACCTATTTCGAAGGAGCTCAACTCGCAAGTTATTGGAGGTACAATTAATTTGCATGGAGCTCTCAACATACAAGCGACGAAAGTAGGATCTGATACTGTTTTAAACCAGATTATTAGTCTGATTGAGACAGCACAAATGTCAAAAGCACCCATTCAGAAATTTGCAGATTTCGTAGCAAGCATCTTTGTTCCTACAGTTGTTGCTGTGGCATTAATTACGTTGTTGGGATGGTATATTGGTGGAGTTGTTGGAGCATATCCTAATCACTGGCTCCCCGAAAATGGGAACTACTTTGTATTTGCACTCATGTTTTCCATATCGGTTGTGGTGATTGCTTGTCCTTGTGCACTTGGCTTGGCCACACCAACTGCTGTCATGGTTGCAACAGGAGTTGGGGCTAATAACGGTGTGTTAATCAAAGGGGGAGATGCATTAGAAAGAGCACAGAAGGTTAAATATGTAATCTTTGATAAAACTGGCACTCTTACTCAGGGAAAGGCCTCTGTTACAACAGCCAAACTTTTCACAGGAATGGATCGTGGAGAATTTCTCAAATTAGTGGCTTCTGCTGAGTCTACGAGTGAACATCCGTTGGGGAAAGCTATAGTCGAATATGCTCGCCATTTCCATTTCTTTGATGTGCCATCTGCAACTATGAGTTCCGAAAACCACAGCACACAGCCTTCTAGTTGGCTTTTTGATGTCACCAATTTCTCAGCGCTGCCAGGAAGGGGAGTTCAATGTTCTATTGATGGTAAATGGATTTTGGTTGGTAACAGGAAGTTGATGAATGAAAATGGAATCACAGTATCACCTCATATTGATAATTTCGTAGTTGAGCTAGAAGAAAGTGCAAAAACAGGCATACTTGTTGGGTATAATGGTGACTTGATTGGCGTGTTGGGAGTAGCAGACCCTTTAAAAAGAGAAGCTGCTGTGGTCATTGAGGGACTTGGAAAAATGGGTGTTATTCCAGTAATGGTTACGGGGGACAATTGGAGAACAGCTCGTGCGGTTGCCAAGGAGGTTGGTATTGGAGATGTGAGGGCAGAAGTAATGCCTGCAGGAAAGGCTGAAGTTGTTCGCTCATTCCAAAAAGATGGTAGCATAGTTGCAATGGTGGGCGATGGAATCAATGACTCCCCAGCTTTAGCTGCTGCTGATATTGGCATGGCGATTGGGGCAGGGACTGATATCGCCATTGAAGCTGCCGACTATGTTCTGATGAGAAATAGCTTGGAAGACGTAATCACAGCCATACATCTGTCGAGAAAAACCTTTTCTCGGATACGATTGAATTACATGTTTGCGATGGCCTACAACGTGATTGCAATTCCGGTAGCTGCAGGTGTATTTTACCCTTCATTAGGGATAAAGTTGCCGCCATGGGTAGCAGGTGCGTGCATGGCTCTATCATCGGTAAGCGTCGTTTGCTCTTCTTTGCTTCTTCGAAGATACAGAAAACCCAGACTTACCACTTTGCTAGAAATTACTGTAGAATAG | 3015 | 43.45 | MARSFGGLQLTQVASDGRGPHSLVSGDLSDDLEDVRLLDSYEGSERDLGKLEDGMKRVQVRVSGMTCAACSNSVEGALRSVHGVLRASVALLQNKADVIFDPNFVKDNDIKTAIEDAGFEAEILPETSGAKPHGTLLGQFSIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDSTVISKGEIVEAIEDAGFEASFVRSSEQDKILLGVSGVLSEIDAQLLEGVLINLQGVRQFLFDRTSRELEVLFDPEVVKPRSLVDEIEGRSNGKFKVHVVSPYCRITSKDVEETSTMFRLFTSSLFLSIPVFFIRVICPHIPLLYSLILQRCGPFLMGDWLKWALVSVVQFVIGKRFYLAAFRALRNGSTNMDVLVALGTSASYFYSVYALLYGAITHFWSPTYFETSSMLITFVLFGKYLECLAKRKTSDAIKKLVELAPATALLVVKDKGGKLIGERLIDALLIQPGDILKVLPGSKIPADGVVVWGSSHVNESMVTGESIPISKELNSQVIGGTINLHGALNIQATKVGSDTVLNQIISLIETAQMSKAPIQKFADFVASIFVPTVVAVALITLLGWYIGGVVGAYPNHWLPENGNYFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKASVTTAKLFTGMDRGEFLKLVASAESTSEHPLGKAIVEYARHFHFFDVPSATMSSENHSTQPSSWLFDVTNFSALPGRGVQCSIDGKWILVGNRKLMNENGITVSPHIDNFVVELEESAKTGILVGYNGDLIGVLGVADPLKREAAVVIEGLGKMGVIPVMVTGDNWRTARAVAKEVGIGDVRAEVMPAGKAEVVRSFQKDGSIVAMVGDGINDSPALAAADIGMAIGAGTDIAIEAADYVLMRNSLEDVITAIHLSRKTFSRIRLNYMFAMAYNVIAIPVAAGVFYPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTLLEITVE | 1004 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 30132494 | 30137688 | + | Bma025944.1 | Bma07g00880 | 86017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma07g00880 | 1004 | Pfam | haloacid dehalogenase-like hydrolase | 655 | 892 | - | - | |
| Bma07g00880 | 1004 | Gene3D | - | 426 | 549 | - | - | |
| Bma07g00880 | 1004 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 757 | 960 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Bma07g00880 | 1004 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 412 | 718 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Bma07g00880 | 1004 | CDD | P-type_ATPase_Cu-like | 300 | 974 | - | - | |
| Bma07g00880 | 1004 | ProSiteProfiles | Heavy-metal-associated domain profile. | 57 | 123 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | Gene3D | - | 626 | 935 | IPR023214 | - | |
| Bma07g00880 | 1004 | SUPERFAMILY | HAD-like | 658 | 984 | IPR036412 | - | |
| Bma07g00880 | 1004 | SUPERFAMILY | HMA, heavy metal-associated domain | 52 | 125 | IPR036163 | GO:0046872 | |
| Bma07g00880 | 1004 | SFLD | p-type atpase | 641 | 930 | IPR044492 | - | |
| Bma07g00880 | 1004 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 373 | 987 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
| Bma07g00880 | 1004 | Gene3D | - | 758 | 809 | IPR023299 | GO:0000166 | |
| Bma07g00880 | 1004 | Gene3D | - | 666 | 757 | IPR023299 | GO:0000166 | |
| Bma07g00880 | 1004 | PANTHER | ATP7, ISOFORM B | 25 | 997 | - | - | |
| Bma07g00880 | 1004 | SUPERFAMILY | Calcium ATPase, transduction domain A | 461 | 545 | IPR008250 | - | |
| Bma07g00880 | 1004 | ProSiteProfiles | Heavy-metal-associated domain profile. | 137 | 203 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | ProSitePatterns | Heavy-metal-associated domain. | 62 | 92 | IPR017969 | GO:0046872 | |
| Bma07g00880 | 1004 | CDD | HMA | 59 | 122 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | ProSitePatterns | Heavy-metal-associated domain. | 142 | 171 | IPR017969 | GO:0046872 | |
| Bma07g00880 | 1004 | Gene3D | - | 55 | 126 | - | - | |
| Bma07g00880 | 1004 | CDD | HMA | 139 | 202 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 661 | 667 | IPR018303 | - | |
| Bma07g00880 | 1004 | PRINTS | P-type cation-transporting ATPase superfamily signature | 659 | 673 | - | - | |
| Bma07g00880 | 1004 | PRINTS | P-type cation-transporting ATPase superfamily signature | 803 | 814 | - | - | |
| Bma07g00880 | 1004 | PRINTS | P-type cation-transporting ATPase superfamily signature | 495 | 509 | - | - | |
| Bma07g00880 | 1004 | PRINTS | P-type cation-transporting ATPase superfamily signature | 825 | 835 | - | - | |
| Bma07g00880 | 1004 | PRINTS | P-type cation-transporting ATPase superfamily signature | 878 | 897 | - | - | |
| Bma07g00880 | 1004 | PRINTS | P-type cation-transporting ATPase superfamily signature | 901 | 913 | - | - | |
| Bma07g00880 | 1004 | Pfam | E1-E2 ATPase | 442 | 638 | - | - | |
| Bma07g00880 | 1004 | PRINTS | H+-transporting ATPase (proton pump) signature | 878 | 894 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Bma07g00880 | 1004 | PRINTS | H+-transporting ATPase (proton pump) signature | 909 | 934 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Bma07g00880 | 1004 | PRINTS | H+-transporting ATPase (proton pump) signature | 850 | 866 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Bma07g00880 | 1004 | ProSiteProfiles | Heavy-metal-associated domain profile. | 211 | 269 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 391 | 953 | IPR023298 | - | |
| Bma07g00880 | 1004 | Gene3D | - | 138 | 203 | - | - | |
| Bma07g00880 | 1004 | PANTHER | HEAVY METAL P-TYPE ATPASE | 25 | 997 | - | - | |
| Bma07g00880 | 1004 | SUPERFAMILY | HMA, heavy metal-associated domain | 138 | 206 | IPR036163 | GO:0046872 | |
| Bma07g00880 | 1004 | TIGRFAM | TIGR00003: copper ion binding protein | 139 | 201 | IPR006122 | GO:0005507 | |
| Bma07g00880 | 1004 | TIGRFAM | TIGR00003: copper ion binding protein | 58 | 121 | IPR006122 | GO:0005507 | |
| Bma07g00880 | 1004 | SFLD | Haloacid Dehalogenase | 641 | 930 | - | - | |
| Bma07g00880 | 1004 | Pfam | Heavy-metal-associated domain | 140 | 200 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | Pfam | Heavy-metal-associated domain | 60 | 120 | IPR006121 | GO:0046872 | |
| Bma07g00880 | 1004 | SUPERFAMILY | HMA, heavy metal-associated domain | 209 | 270 | IPR036163 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma06g01018 | Bma-Chr6:46805334 | Bma07g00880 | Bma-Chr7:30132494 | 1.38E-79 | dispersed | |
| Bma07g00880 | Bma-Chr7:30132494 | Bma07g01648 | Bma-Chr7:52074438 | 0 | dispersed | |
| Bma07g00880 | Bma-Chr7:30132494 | Bma01g02192 | Bma-Chr1:78803560 | 5.53E-66 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma07g00880 | K17686 | - | csv:101205642 | 1587.39 |