Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00925 ATGGAAACTGCGCTCTCGAAGACTGTGTGTGTGATGGACGCCTCAGGGACACTGGGTTCGAGCCTTGTTAAACGTCTTCTCCAGAGGGGTTATTTTGTTCATGCTGCTGTTCAAAGCCATGAGGAATTTCTGTTTAGAGGGTGTGATGAAGAGCAGCTGAAGATTTTCCATTCGGATCCCTTCGACTACCAAAGCATAATCGATGCATTGAAAGGCTGTTCTGGCCTGTTTTATGCGTTTGAGCCTCCCCAAGATTATCCGACCTACGATGAATTCATGGCAGAGGTGGAGGTGAGAGCGGCTCACAACGTAATTGAAGCATGTGCTCAAACCGAAACCATAGACAAGGTCGTTTTTACTTCTTCTGTCACTGCCGTCATTTGGAGAGACGATCACAATTCCATCGCATCAGACTTCGATGAACGGTTGTGGAGTGACGTCAATTTTTGCCGGAAATTCAAGTTATGGCATGGGCTATCAAAGACATTAGCAGAGAAGAGTGCATGGGCATTAGCCATGGACAGGGGAGTAAACTTGGTGTCCATCAATGGAGGATTACTCAAAACCTCTGATCTCACCATAGAAAACCCGTATCTAAAAGGGGCGGCCGAGATGTACGAAGACGGCTTATTCGTTACCATGGATCTAAATTTTGTGGTCGACGCTCACATCTGTGTATTTCAAGACATCTCTTCGTACGGCCGATATCTCTGCTTCAACCACATCATCAACCAAAATGAAGACGCGATTGAGCTCGCTCGGAAGTTAACGCCATCGGTCCCTTTACCTCCAAGGTTAGTCAGACGAAATTGTTCTAATTGTTTATGA 828 46.14 METALSKTVCVMDASGTLGSSLVKRLLQRGYFVHAAVQSHEEFLFRGCDEEQLKIFHSDPFDYQSIIDALKGCSGLFYAFEPPQDYPTYDEFMAEVEVRAAHNVIEACAQTETIDKVVFTSSVTAVIWRDDHNSIASDFDERLWSDVNFCRKFKLWHGLSKTLAEKSAWALAMDRGVNLVSINGGLLKTSDLTIENPYLKGAAEMYEDGLFVTMDLNFVVDAHICVFQDISSYGRYLCFNHIINQNEDAIELARKLTPSVPLPPRLVRRNCSNCL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33532834 33534801 + Bma026027.1 Bma07g00925 86062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00925 275 Gene3D - 1 273 - -
Bma07g00925 275 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 266 - -
Bma07g00925 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 267 IPR036291 -
Bma07g00925 275 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 6 266 - -
Bma07g00925 275 CDD FR_SDR_e 9 273 - -
Bma07g00925 275 Pfam NAD(P)H-binding 14 125 IPR016040 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00925 - - - qsu:112034715 409.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00925 Bma14g00160 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00925 Bma-Chr7:33532834 Bma10g00370 Bma-Chr10:3467510 9.39E-138 dispersed
Bma14g00160 Bma-Chr14:2176602 Bma07g00925 Bma-Chr7:33532834 3.29E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g685 . . . . . . Bma07g00925 Bma14g00160 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0472 . . . . . . Blo03g00870 Blo19g00196 . Bda09g00737 Bpe08g00826 Bpe11g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00925 Bma_Chr07 FPKM 140.369263 149.138092 134.195938 143.336121 185.856857 197.566345 166.023956 254.947205 256.21814 236.382126