Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00926 ATGGCTTTCCGTGAGACTGGAAATGTGGTACACGTGATCGCAGACAGTGGGAGTGAAAACTGGTTGAACGAGGTTTGGGCGACGGAAGACGAATACAGAGCTTGGAACAATGGCGGTGAAATTTTCATGGAGAATCTCACAAACTCGAATTATGATCAGAGACAGTCTCAATCTCTATCAGGGAGCGAGCCTCCAAGCAAGAAATCTAGAAACTCTCAAGATGCGACATCCTCAAACCGATCGAAAGCTATCGGAAAAATGTTCTTCAAGACCAAGCTCTGCTGTAAATTCCGAGCTGGGACTTGCCCATACATCACAAATTGCAATTTTGCTCATAGCATTGAAGAGCTTAGACGACCACCGCCAAATTGGCAAGAAATCGTGGCTGCCCACGACGAAGAAAGGGCAGTGATGGCTGAACCCAGAGAGGAATTTCAGATTCCTTCCATTGGATCTTCAGGTTTTGGCACTGAGACTCAAAGGTCCTATAAGGGAAGACATTGTAAGAAGTTTTACTCAGAAGAAGGTTGTCCCTACGGGGATAATTGCACGTTTCTTCACGATGAGCAGTCGAAAAACCGAGAGAGCGTGGCTATAAGCTTAGGTCCAGGCGGGTATAATGGCGTTCCCACTGCTGCAGCAAATATGAAGCCCTCAAACTGGAAAACAAGGATCTGCAATAAGTGGGAGTTGACTGGATATTGCCCATTTGGAAGCAAATGCCATTTCGCCCATGGAGCTGCTGAATTACACCGATACGGGGGCGGCCTGATGGAAACGGAAACTAGAGATTTATCGACTCTCCCTCCCGACTTAAAGCAAGGAGGAGGCATTAATCCTCAGGGAGACAGCGCGGTTTCTATGGTTCCTCACTCCGAATCATTTCAGAGAGCGAGCCTCGTAGTTCAGAGGACTGCCCAGAGACCTCATCAGAAATGGAAGGGCCCAGATAAAATCAGCCGGATTTATGGGGATTGGATCGACGATATCGAGTAG 996 47.69 MAFRETGNVVHVIADSGSENWLNEVWATEDEYRAWNNGGEIFMENLTNSNYDQRQSQSLSGSEPPSKKSRNSQDATSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHDEERAVMAEPREEFQIPSIGSSGFGTETQRSYKGRHCKKFYSEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYNGVPTAAANMKPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYGGGLMETETRDLSTLPPDLKQGGGINPQGDSAVSMVPHSESFQRASLVVQRTAQRPHQKWKGPDKISRIYGDWIDDIE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33647025 33648381 + Bma026030.1 Bma07g00926 86063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00926 331 Gene3D - 155 205 - -
Bma07g00926 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Bma07g00926 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Bma07g00926 331 Gene3D - 83 119 - -
Bma07g00926 331 Gene3D - 214 252 - -
Bma07g00926 331 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Bma07g00926 331 MobiDBLite consensus disorder prediction 52 80 - -
Bma07g00926 331 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Bma07g00926 331 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Bma07g00926 331 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Bma07g00926 331 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Bma07g00926 331 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Bma07g00926 331 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Bma07g00926 331 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Bma07g00926 331 PANTHER CCCH ZINC FINGER/TIS11-RELATED 19 328 IPR045877 GO:0003729
Bma07g00926 331 SUPERFAMILY CCCH zinc finger 217 251 IPR036855 GO:0046872
Bma07g00926 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 19 328 - -
Bma07g00926 331 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00926 - - - csv:101210161 549.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00926 Bma14g00159 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00926 Bma-Chr7:33647025 Bma11g00272 Bma-Chr11:2491291 9.71E-12 dispersed
Bma01g00426 Bma-Chr1:3555648 Bma07g00926 Bma-Chr7:33647025 6.40E-55 transposed
Bma14g00159 Bma-Chr14:2170671 Bma07g00926 Bma-Chr7:33647025 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57636 PF00642 zf-CCCH 6.60E-11 CL0537 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00926 Bma_Chr07 FPKM 1.636999 1.366728 3.801625 3.993841 71.74865 58.188271 69.006157 0.93115 0.500136 0.483572