Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00945 ATGGCTGCTGAGCTTGGCTTTCAGTCCCAGCAGAGAGAGGATCACCATCAATCGGCACCGGGCTTTACCGTCAGCTCGTGGGTCTGGAACCCGATGCGAACCCAAGACGAGGACGACTCGTGGGAGGTTAGGGCTTTCGCAGAAGATGCAGGAAGCATTATGGGTACTACTTGGCCACCAAGGTCTTACACTTGCACCTTCTGTGGAAGAGAGTTTAGGTCAGCTCAAGCCCTAGGTGGCCATATGAACGTCCACCGCCGAGACCGTGCTCGGCTACAGCAGTCTCCGCCTAAGTCGATGGTTCGGTCCGGCTATTCATCTTCACCTTCTAGCCAACTAATTTTCCCTCCTCAAGAACTAGTGACAAATGGAGGATTATGTCTTCTTTACGGATTACAAGTCCCTAATCCTGGCTTTACTCACGAAAATGGGTCTATTCAATTAAGTTCAAGTCTTTCTTCTTCGCCATATCTACCGCATTATAAGCCCAGTCCATCTATTCCAGCATCTGTTTTTTTTCAGCAGGCTCAGACAGCCAATTCAGAAATTAGTTCATCAAGTAATTTTCACCCTACCAAAGTCGATGAACACCCACAAAACGTTGCAAATGATGAACACGAGGAGCTTGATTTAGAGCTTCGGCTCGGGCATGGAAGACAACCATAG 666 48.5 MAAELGFQSQQREDHHQSAPGFTVSSWVWNPMRTQDEDDSWEVRAFAEDAGSIMGTTWPPRSYTCTFCGREFRSAQALGGHMNVHRRDRARLQQSPPKSMVRSGYSSSPSSQLIFPPQELVTNGGLCLLYGLQVPNPGFTHENGSIQLSSSLSSSPYLPHYKPSPSIPASVFFQQAQTANSEISSSSNFHPTKVDEHPQNVANDEHEELDLELRLGHGRQP 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35697695 35698360 + Bma026075.1 Bma07g00945 86082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00945 221 MobiDBLite consensus disorder prediction 182 221 - -
Bma07g00945 221 SMART c2h2final6 63 85 IPR013087 -
Bma07g00945 221 Pfam C2H2-type zinc finger 63 87 - -
Bma07g00945 221 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 32 216 - -
Bma07g00945 221 PANTHER OS07G0101800 PROTEIN 32 216 - -
Bma07g00945 221 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Bma07g00945 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Bma07g00945 221 MobiDBLite consensus disorder prediction 96 112 - -
Bma07g00945 221 MobiDBLite consensus disorder prediction 197 221 - -
Bma07g00945 221 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Bma07g00945 221 Gene3D Classic Zinc Finger 54 112 - -
Bma07g00945 221 MobiDBLite consensus disorder prediction 82 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00945 - - - pop:18096965 199.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00715 Bma07g00945 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01855 Bma-Chr1:67900169 Bma07g00945 Bma-Chr7:35697695 8.59E-24 dispersed
Bma04g00682 Bma-Chr4:6664820 Bma07g00945 Bma-Chr7:35697695 1.12E-26 dispersed
Bma05g00715 Bma-Chr5:41370129 Bma07g00945 Bma-Chr7:35697695 2.42E-39 dispersed
Bma07g00945 Bma-Chr7:35697695 Bma07g00958 Bma-Chr7:36279297 1.34E-158 dispersed
Bma07g00945 Bma-Chr7:35697695 Bma12g00204 Bma-Chr12:2725472 1.83E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007423 2 1 1 5 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57639 PF13912 zf-C2H2_6 4.20E-07 CL0361 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00945 Bma_Chr07 FPKM 0.0 0.0 3.72434 5.425126 6.064757 6.466646 6.205451 4.907239 3.951866 6.749553