Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00954 ATGGATCAGATGGAATCTCTTCCTGTTTCCATTGGGAAATTATCAGATCTTACTGAATTAGACTTGTCTGAAAACAAGATCATGGTTCTTCCACCTAGTATTGTTAGCCTCCGATCCTTGGCGAAGCTTGATCTCCATTCGAATCAGCTAGCTAACCTTCCTGATTCATTGGGTGAACTCATCAATCTGACCGACTTAGAACTTCGTGCTAACCGACTAAAATCATTGCCTGCTTCTTTTGGTAATTTGACAAACCTTGTTAATCTCAACTTGAGTTCAAATCAGTTCACTCATTTGCCTGAAACAATCGGGAATTTGACAAGTTTGAAGAGATTGAATGTGGAAACTAATGATCTTGAAGAATTGCCTTACACCATTGGATCATTGCTCATCCCTAATGGAGCTAAGATTGGATTTCAATCAGCTCAAGGCTCTTCCAGAAGCAATAGGAAAGCTTGGAAACTTGGAGATTCTCACCCTGCATTATAA 489 39.67 MDQMESLPVSIGKLSDLTELDLSENKIMVLPPSIVSLRSLAKLDLHSNQLANLPDSLGELINLTDLELRANRLKSLPASFGNLTNLVNLNLSSNQFTHLPETIGNLTSLKRLNVETNDLEELPYTIGSLLIPNGAKIGFQSAQGSSRSNRKAWKLGDSHPAL 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36083788 36084276 + Bma026089.1 Bma07g00954 86091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00954 162 Gene3D Ribonuclease Inhibitor 2 146 IPR032675 -
Bma07g00954 162 Pfam Leucine rich repeat 12 50 IPR001611 GO:0005515
Bma07g00954 162 Pfam Leucine rich repeat 62 119 IPR001611 GO:0005515
Bma07g00954 162 ProSiteProfiles Leucine-rich repeat profile. 16 37 IPR001611 GO:0005515
Bma07g00954 162 ProSiteProfiles Leucine-rich repeat profile. 39 60 IPR001611 GO:0005515
Bma07g00954 162 SMART LRR_typ_2 83 105 IPR003591 -
Bma07g00954 162 SMART LRR_typ_2 60 82 IPR003591 -
Bma07g00954 162 SMART LRR_typ_2 37 58 IPR003591 -
Bma07g00954 162 SMART LRR_typ_2 106 129 IPR003591 -
Bma07g00954 162 SMART LRR_typ_2 14 36 IPR003591 -
Bma07g00954 162 ProSiteProfiles Leucine-rich repeat profile. 85 106 IPR001611 GO:0005515
Bma07g00954 162 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 1 130 - -
Bma07g00954 162 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 130 - -
Bma07g00954 162 SMART LRR_bac_2 37 56 - -
Bma07g00954 162 SMART LRR_bac_2 60 79 - -
Bma07g00954 162 SMART LRR_bac_2 83 102 - -
Bma07g00954 162 SMART LRR_bac_2 106 125 - -
Bma07g00954 162 SMART LRR_bac_2 14 33 - -
Bma07g00954 162 SUPERFAMILY L domain-like 4 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00954 - - - gra:105791943 200.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00954 Bma-Chr7:36083788 Bma12g01054 Bma-Chr12:42635482 4.41E-09 dispersed
Bma14g00144 Bma-Chr14:2050539 Bma07g00954 Bma-Chr7:36083788 7.53E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g647 . . . . . . Bma07g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00105 . . . . . . . Cmo19g00475 . . . . . Cpe15g00356 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034920 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00954 Bma_Chr07 FPKM 8.349723 10.344956 4.811394 4.425202 4.617508 4.260919 5.413713 6.424069 5.661177 7.351616