Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00956 AAAATGCCTGTTCCTCTCGCGCCATATCCGACCCCTTCTACTCCCTACACACAGCCTACCAATGGCGCGCAGAGCCAGCTTGTGTGTTCTGGATGCAGGAATTTGTTAGTATACCCAGTGGGTGCAACTTCTGTTTGCTGCGCTGTTTGTAATGCAGTCACACCTGTGCCTCCTCCTGGCACGGAAATGGCGCAATTGGTGTGTGGAGGCTGCCATACTTTACTCATGTACATTCGGGGAGCGACAAGCGTACAATGCTCTTGTTGCCACACTATAAATCTCGCTTTGGAAGCCAATCAGGTAGCGCATGTCAATTGCGGGAACTGCCGGATGCTATTGATGTACCAATATGGGGCACGTTCCGTTAAATGTGCAGTATGCAATTTTGTGAGTTCGGTTGGGGTGAGTACCTATTTTATTTCATCTTCTCTT 432 49.07 KMPVPLAPYPTPSTPYTQPTNGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTPVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTINLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVSSVGVSTYFISSSL 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36137548 36139183 + Bma031389 Bma07g00956 86093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00956 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 55 IPR005735 -
Bma07g00956 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Bma07g00956 144 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 130 IPR005735 -
Bma07g00956 144 PANTHER PROTEIN LOL1 2 137 - -
Bma07g00956 144 Pfam LSD1 zinc finger 29 53 IPR005735 -
Bma07g00956 144 Pfam LSD1 zinc finger 106 130 IPR005735 -
Bma07g00956 144 Pfam LSD1 zinc finger 68 92 IPR005735 -
Bma07g00956 144 PANTHER PROTEIN LSD1 2 137 IPR040319 -
Bma07g00956 144 SUPERFAMILY Multiheme cytochromes 29 127 IPR036280 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00956 - - - cit:102618163 256.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00956 Bma-Chr7:36137548 Bma11g00402 Bma-Chr11:4342097 2.11E-13 dispersed
Bma07g00949 Bma-Chr7:35936933 Bma07g00956 Bma-Chr7:36137548 4.56E-99 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g645 . . . . . . Bma07g00956 . . . . . . . . . . . . . . . . . Cla10g00174 Cam10g0175 Cec10g0183 Cco10g0184 Clacu10g0179 Cmu10g1026 Cre10g0431 . . . . . . . . . . . . . . . . . . Cmo19g00476 . . . . . Cpe15g00357 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003240 1 4 1 2 2 2 1 2 2 1 2 2 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 4 1 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57642 PF06943 zf-LSD1 1.30E-10 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00956 Bma_Chr07 FPKM 2.437191 2.52691 0.637298 0.221747 1.932799 1.34145 1.796419 0.0 0.0 0.0