Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00957 ATGGACCTTCTCCTTCCCTCCAATTCATGCTCTTCGGTGTACCGGATATCGGAATTTAGCCGCCGGTTTCCCGCATCTTGTGCCCGCAACATTCTCTTCAGTTCCTTCAAATGTCGCCGGAGAATGACGTCGTCGGAGCTTCAGAGTGTGGTAGCAGTTGACGGAGGAGTCAGTGGTAATTCTTCATCGATTCCTACTCACAAGGTCACCGTTCATGACAGACAGAGAGGAGTTGTGCATGAATTCTTTGTTCCGGAGGACCAGTATATACTGCACACAGCTGAAGCTCAGAATATTTCGCTTCCATTTGCTTGCAGGCACGGTTGTTGCACTAGTTGTGCGGTACGTATAAAATCAGGACAACTTAGACAACCTGAAGCACTTGGGATATCTGCGGAGTTAAAGTCCAAGGTGAGGGGCTTACTATGTTGA 432 48.38 MDLLLPSNSCSSVYRISEFSRRFPASCARNILFSSFKCRRRMTSSELQSVVAVDGGVSGNSSSIPTHKVTVHDRQRGVVHEFFVPEDQYILHTAEAQNISLPFACRHGCCTSCAVRIKSGQLRQPEALGISAELKSKVRGLLC 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36142795 36144313 - Bma026093.2 Bma07g00957 86094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00957 143 SUPERFAMILY 2Fe-2S ferredoxin-like 60 143 IPR036010 GO:0051536
Bma07g00957 143 Gene3D - 47 143 IPR012675 -
Bma07g00957 143 PANTHER FERREDOXIN 29 143 - -
Bma07g00957 143 PANTHER FERREDOXIN C 2, CHLOROPLASTIC 29 143 - -
Bma07g00957 143 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 67 143 IPR001041 GO:0051536
Bma07g00957 143 CDD fer2 69 143 IPR001041 GO:0051536
Bma07g00957 143 Pfam 2Fe-2S iron-sulfur cluster binding domain 80 131 IPR001041 GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00957 K02639 petF; ferredoxin - vvi:100242061 201.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00957 Bma-Chr7:36142795 Bma07g01442 Bma-Chr7:50168566 8.40E-12 dispersed
Bma07g00948 Bma-Chr7:35929873 Bma07g00957 Bma-Chr7:36142795 1.47E-98 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g644 . . . . . . Bma07g00957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo19g00477 . . . . . Cpe15g00358 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008792 1 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 2 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00957 Bma_Chr07 FPKM 1.185511 1.062503 0.308868 0.328795 1.271166 1.667421 1.279754 0.776781 0.434349 0.614094