Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00961 ATGGATCTACGGGAAGTTCAGCCACCGCCACCTTCGGCAGCATCAAATATGATGATGGGAATTGGACCTACCCATTACCCGACTTCCATGCCTAACTCGAACAATTCTATGATCGGCCCCAATTCTGCTACAGCTCATATGATGTCGCCTACGTCCCGATTCCCGTTCAACTCTGTGGTCACTCCCGTGTCGAAGCCTTTAGACTCGCAAAATTCTAACGTTTATGATGCATCGTCCACTGGATTGCGTTCTGGTGGGTTTAACATTGAGACGGAGAAGAAGAAGAGAGGACGACCAAGGAAGTACTCGCCGGACGGTAATATCGCTTTGGGATTAGCGCCTACTCCGGTGGGTCAGACTCAGGGTAATTCTAGTGGCACTCCATTAACGGAGCCACTTGCAAAAAAGAGCAGAGGAAGACCGCCCGGCTCCGGAAAGAAGCAAATGGACGCTCTGGGTAGGACTGGTGGTGTTGGTTTTACCCCCCATGTTATCCTGGTGAATCCTGGAGAGGGGAAATATGAACTCATTTCTCTATCGGGTTCCTACTTGTTTGCTGAAAATCATGGTAGTCGAAGTCGATCTGGTGGCTTGAGTGTAATCATGGCCGGAGCAGATGGGCGAGTTCTTGGTGGGGGAGTTACAGGAATATTATTGGCTGCAACCCAAGTTCAGGTTATTGTGGGGAGCTTTATTGTGGATGAGAAAAAAGCCAATGCAAACGTTCTAAAATCTTGCTCTTCAACCGCACCACCGCAGATGATAAACTTCGAGACGGATGCCAGCCCTTCCTCTCAAATGGCCTCCAGTGATTCATCTGATGAAAATGCCAGCAGCCCTCTTACCCGGCCCCCAGGAATTTACAACAACACCAGCCAACCGATTCAAAATAACCTTCAGATGTATCGACTATGGGGCGACCAAACGCAACATTGA 936 49.25 MDLREVQPPPPSAASNMMMGIGPTHYPTSMPNSNNSMIGPNSATAHMMSPTSRFPFNSVVTPVSKPLDSQNSNVYDASSTGLRSGGFNIETEKKKRGRPRKYSPDGNIALGLAPTPVGQTQGNSSGTPLTEPLAKKSRGRPPGSGKKQMDALGRTGGVGFTPHVILVNPGEGKYELISLSGSYLFAENHGSRSRSGGLSVIMAGADGRVLGGGVTGILLAATQVQVIVGSFIVDEKKANANVLKSCSSTAPPQMINFETDASPSSQMASSDSSDENASSPLTRPPGIYNNTSQPIQNNLQMYRLWGDQTQH 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36479208 36484289 - Bma026098.1 Bma07g00961 86098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00961 311 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Bma07g00961 311 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Bma07g00961 311 MobiDBLite consensus disorder prediction 114 131 - -
Bma07g00961 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 232 - -
Bma07g00961 311 CDD DUF296 171 231 IPR005175 -
Bma07g00961 311 MobiDBLite consensus disorder prediction 253 293 - -
Bma07g00961 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 231 IPR005175 -
Bma07g00961 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 171 296 IPR039605 GO:0003680
Bma07g00961 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 76 171 IPR039605 GO:0003680
Bma07g00961 311 MobiDBLite consensus disorder prediction 66 86 - -
Bma07g00961 311 Gene3D - 155 245 - -
Bma07g00961 311 MobiDBLite consensus disorder prediction 66 155 - -
Bma07g00961 311 MobiDBLite consensus disorder prediction 88 102 - -
Bma07g00961 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 171 296 - -
Bma07g00961 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 76 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00961 - - - zju:107430497 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00961 Bma-Chr7:36479208 Bma14g00147 Bma-Chr14:2089797 1.27E-112 dispersed
Bma07g00961 Bma-Chr7:36479208 Bma02g01062 Bma-Chr2:52212006 1.48E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g637 . . . . . . Bma07g00961 . Cmo06g00662 Cmo16g01203 . . . . . Cpe14g00855 . Bhi11g00147 . . . Hepe06g1765 Mch10g1643 . . . . . . . . . . . . . . Chy04g00085 . Blo03g00838 Blo19g00178 . . . . . . . . Cmo19g00256 Cma06g00655 Cma16g01152 Car06g00584 Car16g01092 . Cpe15g00219 . . . . . . . . . . . . . . . . Chy06g02136 Cme04g00108
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005186 0 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00961 Bma_Chr07 FPKM 8.250851 8.784404 12.206629 12.613029 40.332218 37.573326 43.019161 15.635118 14.294127 15.848264