Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00974 ATGGCTTGCGGAGGATTTTTTGGGTGCCTATTAAAGCTCCTGAACTTTCTGATGACCCTTGTTGGTCTTGCTATGGTGGGCTATGGAATTTACTTACTGATCGAGTTCCTAAAATCTAGCAGTGACACCCTCCAAGATTCTCCTGTGAGCAGTGATCGGGATTTTATTCTGCTAGGTCGTCCATTGTTAATGTCTGTTTCCCTGTCTTCTAGTATTTCAGACAAACTAGAGGAAGCCTGGTTCATATATTTATTTATTGGTATAGGAATTGTTCTCTTCATCATCGCTAAGTTTGGTTGTGCTGGAGTTATAACGCGCAATAGATGTTGTTTGGGTTGTTATTCAGTTTTTGTGATACTGGTGATGGCGGTGGAACTTGCATGTGCAGGCTTCATTTACTTCGACAAAGATTGGAAAGATAAAATCCCAACAGACGATAGTGGTGATTTTGATATGATAGTTGAGTTTTTTAAAAAGAAGTGGAAAATTGTTAGATGGGTTGCTTTAGCCATTATAATATTGGAGGCTATCCTTTTCTTGTTGACTCTTGTTGTAAAGGCAACAAACAAACCAGCCGAATATGACAGTGATGAGGAATTCATCAATCCTAGGCAGCCACTTATCAATAGGCCTATTGGTCCAGCAACAGGTTTACCTGTTACCGGAGCCGTTGATCAGAGGCCGGGCAGAAGTGATGCTTGGAGTATGCGGATGAGGGAAAAGTATGGACTCGACACTGCCGAATTTACCTACAATCCGTCGGAGTCAAATAGGTACCAACAAGTTCAGGAACAGCCAGCAGAAGAAAGGAAGCGTTGCACCATCATGTAA 831 42.0 MACGGFFGCLLKLLNFLMTLVGLAMVGYGIYLLIEFLKSSSDTLQDSPVSSDRDFILLGRPLLMSVSLSSSISDKLEEAWFIYLFIGIGIVLFIIAKFGCAGVITRNRCCLGCYSVFVILVMAVELACAGFIYFDKDWKDKIPTDDSGDFDMIVEFFKKKWKIVRWVALAIIILEAILFLLTLVVKATNKPAEYDSDEEFINPRQPLINRPIGPATGLPVTGAVDQRPGRSDAWSMRMREKYGLDTAEFTYNPSESNRYQQVQEQPAEERKRCTIM 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 37568814 37572737 - Bma026125.1 Bma07g00974 86111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00974 276 MobiDBLite consensus disorder prediction 255 276 - -
Bma07g00974 276 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 2A 2 249 - -
Bma07g00974 276 Pfam Tetraspanin family 9 138 IPR018499 GO:0016021
Bma07g00974 276 PANTHER TETRASPANIN 2 249 IPR018499 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00974 - - - vvi:100245417 368.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00974 Bma-Chr7:37568814 Bma09g00528 Bma-Chr9:41919600 1.42E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g606 . . . . . . Bma07g00974 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0603 . . . . . . . . . . Bpe08g00859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002152 2 0 1 2 2 1 4 1 1 2 1 1 3 2 2 3 1 2 3 2 3 2 2 2 2 2 2 8 3 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00974 Bma_Chr07 FPKM 0.289622 0.22491 13.880559 15.26839 5.743199 5.629383 5.254842 0.936413 1.041678 1.173602