Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00979 ATGGATTCTGAAGAAAGTAACCTCTTCGAAACGGCTTCTCAGCCTGACACGGGCAACGATGCGTACACTTTTCTGGAATTCAATTCACAGGGCGAAGATTTCGACTTTGACGAATTTCGTGATCCGATCAGATCTTCTGTTGCATGGCCAACGCCATCCGATTCATTGGCTGATGCCGCGGACCGTGGCGGTGGTCCTGGTTCGGATTACCAGTCTGATACATCGCCAGTTTCTGCTCCCTCTGGAAGTGCCGCCAAGGGTCGGACTGGCGGGTTGGGTAGCAGTAGTGGGAACAATCAGGTTGTTGACGCTTTGGCTGCTGGGATGGGCGGGTTGAATTTTGATGATACTGGGGAGGATGATAATTACGGGTTTGGTAAAGGGAATTTCACAGAACATGCGTGCCGGTACTGTGGTGTTTCAAACCCAGCTTGCGTTGTCAGGTGCAATGTGCCGTCATGCCGTAAATGGTTTTGCAATTCAAGAGGAAACACTTCCGGTTCCCACATCGTAAATCATCTAGTTCGAGCAAAGCATAAGGAAGTTTGTCTTCATAAAGATAGTTCTTTGGGGGAGACGATCCTTGAATGCTACAACTGTGGATGTCGAAATGTGTTCCTTCTTGGATTTATTTCTGCCAAGACAGAAAGTGTGGTTGTTCTTCTTTGTAGAGAACCTTGCTTAAATGTTAATGCATTAAAGGATATGAATTGGGACCTGAGTCAGTGGTGCCCTCTGATTGATGATCGTTGTTTTTTGCAATGGTTGGTAAAGGTTCCATCTGAACAAGAGCAATTAAGGGCCCGGCAGATTAGTGCTCAGCAAATTAATAAGGTGGAAGAGCTTTGGAAGATAAATCCCGATGCTACCCTGGAAGACCTTGAAAAGCCTGGCGTAGATGATGAGCCTCAACCAGTAGCACTGAAATACGAAGATGCATATCAGTATCAAAATGTTTTTGCACCTCTTATCAAGCTTGAAGCTGATTATGATAAAATGATGAAAGAATCACAGAGCAAAGACAATATTACTCTTCGGTGGGATATTGGTCTTAACAAGAAGCGAATAGCATACTTTGTCTTTCCAAAGGAGGACAATGAGTTGCGCCTTGTGCCCGGAGATGAGTTGCGGTTACGTTATTCTGGTGATGCGGTCCATCCAGCATGGCAGTCAGTGGGGCATGTTATTAAGCTAACTGCTCAGGAGGAGGTTGCACTGGAACTTCGAGCAAGTCAGGGAGTCCCAGTTGATATAAACCATGGATTTAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGATCGAATGCAAGGAGCAATGAAAACTTTTGCGGTGGACGAGACCAGTGTTAGTGGTTATATCTATCACCATTTGCTGGGTCATGAAGTAGAGGTGCAAATGGTCCGCAATACGCTACCTCGTCGCTTTGGCGCACCTGGGCTACCAGAACTCAATGCCTCGCAAGTTTTTGCTGTAAAGAGTGTTCTTCAGAAGCCTATAAGTTTGATTCAAGGTCCACCTGGCACAGGAAAAACAGTGACCTCTGCAGCCATTGTTTATCACATGGCTAAACAAGGCCAGGGGCAGGTTTTAGTTTGTGCGCCTAGTAATGTTGCAGTGGACCAACTTGCTGAAAAGATCAGTGCGACTGGATTAAAAGTGGTTAGAATATGTGCAAAATCAAGGGAAGCTGTAAGCTCACCAGTTGAGCATTTGACACTACATTATCAGGTTCGACATTTGGACACATCTGAAAAGAGAGAATTGTCCAGTGGTGATGAGAAGAAATACAAAGCACTAAAACGAGCTACAGAGAGGGATATATCTCAAAGTGCTGATGTCATTTGTTGCACCTGTGTTGGTGCAGGAGATCCTCGACTATCAAACTTTAGATTTCGCCAGGTACTTATTGATGAATCTACTCAAGCAACAGAGCCTGAGTGTCTTATTCCACTAGTTCTTGGAGTAAAGCAGGTTGTTCTTGTTGGTGATCATTGCCAGCTTGGTCCTGTCATTATGTGTAAGAAAGCAGCTCGAGCTGGGCTAGCACAGTCACTCTTTGAGCGCCTTGTTCTTCTTGGTGTTAAACCCATCAGGTTGCAGGTTCAATACCGTATGCATCCATCTCTGTCGGAGTTTCCCTCTAATAGCTTTTATGAAGGTACTCTCCAAAATGGAGTGACCATCAATGAAAGGCAAACAACAGGCATTGATTTCCCTTGGCCTGTGCCTAATCGTCCCATGTTCTTTTATGTCCAGATGGGGCAAGAAGAGATAAGCGCCAGTGGAACATCGTACTTAAATAGAACGGAGGCTGCAAATGTTGAGAAAATTGTTACTACCTTCTTAAGGAGTGGTGTGGTTCCCAGCCAGATTGGTGTAATTACCCCATATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAACGGTGCTCTCAGGCAGCAGCTTTACAAGGAAATTGAGGTTGCTAGTGTAGACTCCTTTCAAGGAAGGGAGAAGGATTACATCATTCTTTCATGTGTGAGGAGTAATGAACATCAGGGCATTGGATTTCTTAATGACCCTCGTCGGCTTAATGTTGCATTGACACGAGCAAGATATGGTATTGTCATTCTTGGAAACCCAAAAGTTTTGAGCAAACAGCCCCTTTGGAATGGTTTATTGACACATTATAAGGAAAATGAATGCTTGGTTGAAGGGCCTCTGACTAATTTGAAACAGAGTATGGTTCAGTTCCAAAAACCCAAAAAGATCTACAATGATCGACGCCTGGTCTTTGGTGGAGGATCTGGGTTGGGATCTGATGACACTTTCAGTACTAGTTCTGGATCTGGTCTAAATTCTGATCGACGTAGCAACCGCAGCCGGGGCACCTACATGACACCTGGCCCACCTAATGGTGCTCACAAGCCTGCCACACAACCTACTGGGTATCCTATGCCTCGAATTCCCCTTCCACCATTTCATAGTGGTGCTTCTCAGCCATATGCGATTCCAAGTCGTGGAGCAGTGCATGGGCCAATTGGTGCTGGCCCTCATGTTCCTCCTCCAGGAAGTAGGGGTTTTGGTGCTGGTCGTGGAAGCACAGGCAGTTCTATTGGTAGTCATCTCCAACACCAGCAAAGCCCACAGCAATCAATAGGAAATATTGGCTCTTCTTTCAACTTCCCTACCTTAGAGAATCCAAACAGCCATCCATCTGTGGTTGGTCCATTATCTCAACATGGATTTGTTAACACTTTGCCAATTCAAGGGCCGAGCCAAACTTTTCGTGATGGATTTTCCATGGGAGGCTTGCCACAAGACTTTTTGGGTGACGATTTCAAAAGTCATGGATCGCATGTTCCTTACAATGTCGCTGACTTTTCCACTCAAACCTCTCCAAGTGCATACAATGTTGATTACAATCAAGGTCCACAAACTGGGTTTCCAGGGAGCGTTCTTAACCAAAACTCTCAAGCGGGATATTCTCGTTTCGGAGGTGGAAGTGAGTTTATGCCTCAGGACTACATCGCTCATGGATCACAAGGTCTATTCAGTCAGGTGGGATTTAATGATCTAACTCCGGAAGATGCCTCACAAAATCAGTTTGGCGGACCCAACACCAACCCCCTTCATTCTCAGGGTTTGATGAATTCTCTATACTCTCAACCCTTCACCCACTACAACACTCCTCCACTGAACCTACCTGCCACTCAACAGCAGCCTTCACCATCTCAGGGCTCCCAAAATCAGAAGGTTCACTACAACGGTTGA 3765 45.44 MDSEESNLFETASQPDTGNDAYTFLEFNSQGEDFDFDEFRDPIRSSVAWPTPSDSLADAADRGGGPGSDYQSDTSPVSAPSGSAAKGRTGGLGSSSGNNQVVDALAAGMGGLNFDDTGEDDNYGFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSSLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKINPDATLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITLRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAVHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRICAKSREAVSSPVEHLTLHYQVRHLDTSEKRELSSGDEKKYKALKRATERDISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKENECLVEGPLTNLKQSMVQFQKPKKIYNDRRLVFGGGSGLGSDDTFSTSSGSGLNSDRRSNRSRGTYMTPGPPNGAHKPATQPTGYPMPRIPLPPFHSGASQPYAIPSRGAVHGPIGAGPHVPPPGSRGFGAGRGSTGSSIGSHLQHQQSPQQSIGNIGSSFNFPTLENPNSHPSVVGPLSQHGFVNTLPIQGPSQTFRDGFSMGGLPQDFLGDDFKSHGSHVPYNVADFSTQTSPSAYNVDYNQGPQTGFPGSVLNQNSQAGYSRFGGGSEFMPQDYIAHGSQGLFSQVGFNDLTPEDASQNQFGGPNTNPLHSQGLMNSLYSQPFTHYNTPPLNLPATQQQPSPSQGSQNQKVHYNG 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 37745529 37755678 + Bma026132.1 Bma07g00979 86116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00979 1254 MobiDBLite consensus disorder prediction 44 97 - -
Bma07g00979 1254 Pfam AAA domain 587 673 IPR041677 GO:0004386
Bma07g00979 1254 Gene3D - 705 916 IPR027417 -
Bma07g00979 1254 Gene3D - 569 608 - -
Bma07g00979 1254 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 109 1001 - -
Bma07g00979 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 899 IPR027417 -
Bma07g00979 1254 MobiDBLite consensus disorder prediction 68 97 - -
Bma07g00979 1254 Gene3D - 447 704 IPR027417 -
Bma07g00979 1254 CDD ZBD_UPF1-like 134 256 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bma07g00979 1254 MobiDBLite consensus disorder prediction 936 963 - -
Bma07g00979 1254 MobiDBLite consensus disorder prediction 1189 1254 - -
Bma07g00979 1254 MobiDBLite consensus disorder prediction 933 1049 - -
Bma07g00979 1254 Pfam RNA helicase UPF1, 1B domain 338 427 IPR040812 -
Bma07g00979 1254 CDD SF1_C_Upf1 706 895 IPR041679 -
Bma07g00979 1254 Pfam AAA domain 683 878 IPR041679 -
Bma07g00979 1254 Pfam Type III restriction enzyme, res subunit 487 554 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bma07g00979 1254 Pfam RNA helicase (UPF2 interacting domain) 133 286 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bma07g00979 1254 Gene3D - 339 427 - -
Bma07g00979 1254 MobiDBLite consensus disorder prediction 1 26 - -
Bma07g00979 1254 PANTHER DNA2/NAM7 HELICASE FAMILY 109 1001 IPR045055 -
Bma07g00979 1254 CDD DEXXQc_UPF1 483 705 - -
Bma07g00979 1254 CDD 1B_UPF1-like 339 426 IPR040812 -
Bma07g00979 1254 MobiDBLite consensus disorder prediction 1028 1049 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00979 K14326 UPF1, RENT1; regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3] - qlo:115972376 2222.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g00979 Bma14g00130 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00775 Bma-Chr4:8468866 Bma07g00979 Bma-Chr7:37745529 3.22E-51 dispersed
Bma04g01704 Bma-Chr4:53271096 Bma07g00979 Bma-Chr7:37745529 1.37E-46 dispersed
Bma05g01401 Bma-Chr5:53398027 Bma07g00979 Bma-Chr7:37745529 8.17E-43 dispersed
Bma07g00979 Bma-Chr7:37745529 Bma14g01741 Bma-Chr14:37415156 1.42E-07 dispersed
Bma02g01168 Bma-Chr2:53835163 Bma07g00979 Bma-Chr7:37745529 1.93E-32 transposed
Bma08g00857 Bma-Chr8:46667869 Bma07g00979 Bma-Chr7:37745529 8.34E-26 transposed
Bma10g00200 Bma-Chr10:1781137 Bma07g00979 Bma-Chr7:37745529 1.06E-55 transposed
Bma14g00130 Bma-Chr14:1899583 Bma07g00979 Bma-Chr7:37745529 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00979 Bma_Chr07 FPKM 1.860926 3.891006 7.076242 3.13271 8.111309 9.405707 3.588 6.122781 4.86559 7.095443