Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00988 ATGGAGGTGATGGAGACGAGTGGGAGTAGGGCTCTGGGCAGCGACGCGGTGGAGGGTATTTCGGCGAGGCTTTCATTGATTGACGACCTTTACTTTCCTCGCGCTCTCCATTCCGCCGCTACCGACCCCTCTCAACGCAAGACCATCCTAAGCTACCTCCTCCTTCGCGACGTCCCTGTTTTCTTAGAGCGCTATGGTTCACAGTTAACATTCAATGAACTCCACATTTTTGATGTACTTAAAGACAATTATGAAGTGAACTGGCACTTGAAGCATCTCAGAAGCATAATCAGTCCAACATCAGATGAGCTACGATCAAGGTCCGTGACAGTGAAGAACAGAAGGCGGGCCTATCTGAATAAACTGATATTTGAGGGTCAGTATTTCTCAGAGGATGCAATGAGGGAGAGAGAGCCTTATTTGCATCATGAGTATGTTGGAAAGTTTCAGGATCCAAGTGGCAGAAGCATGGCAAGACCAGGGGAGAGATGGTCAGAGACACTAATGCGAAGAACAGAAGAAGCAATCTTGGTTGCAAAGATAAGAGGAGAGCAGCAGAAACTAGGGGTGGCTGAGAGGGATTGGATTGGTAACAATAATATAACCCAAGAGGAAGTAGAGGAGGAGGAGGAAGAAGAAGATGAAAAAGAGGATGAGGAAGAAGAGGAGAAACAGCAGAAAGTTAAGGAGAAAGAGGAAGAAGCAAAAAAAGATGATACACCCGCTGACTCTTCACATTCTGCTGAGGTATTTAGAGGTTTTTCTCCTAAAAAAAAAGCATGA 783 45.85 MEVMETSGSRALGSDAVEGISARLSLIDDLYFPRALHSAATDPSQRKTILSYLLLRDVPVFLERYGSQLTFNELHIFDVLKDNYEVNWHLKHLRSIISPTSDELRSRSVTVKNRRRAYLNKLIFEGQYFSEDAMREREPYLHHEYVGKFQDPSGRSMARPGERWSETLMRRTEEAILVAKIRGEQQKLGVAERDWIGNNNITQEEVEEEEEEEDEKEDEEEEEKQQKVKEKEEEAKKDDTPADSSHSAEVFRGFSPKKKA 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38482932 38484304 - Bma026148.1 Bma07g00988 86125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00988 260 MobiDBLite consensus disorder prediction 222 245 - -
Bma07g00988 260 MobiDBLite consensus disorder prediction 203 221 - -
Bma07g00988 260 Pfam Coiled-coil domain containing protein 97-like, C-terminal 113 241 IPR040233 -
Bma07g00988 260 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 97 5 242 IPR018613 -
Bma07g00988 260 MobiDBLite consensus disorder prediction 199 260 - -
Bma07g00988 260 Coils Coil 198 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00988 - - - csv:101207927 315.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00988 Bma-Chr7:38482932 Bma07g00990 Bma-Chr7:38514050 3.32E-155 dispersed
Bma07g00988 Bma-Chr7:38482932 Bma07g00989 Bma-Chr7:38498769 4.09E-158 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g569 . . . . . . Bma07g00988 . Cmo06g00847 . . . . . Sed07g1307 . . Bhi11g00092 Tan01g2115 Cmetu06g0637 . . . . . . . . . . . . . . . . . . . . Blo19g00157 . Bda09g00687 Bpe08g00873 . . . . . . Cma06g00825 . . . . . . . . . . . . . . . . . . . . Csa03g00219 Chy06g02101 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003798 11 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 44