Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00989 ATGGAGGTGATGGAGACGAGTGGGAGTAGGGCTCTGGGCAGCGACGCGGTGGAGACTATTTCGGCGAGGCTTTCATTGATTGACGACCTTTACTTTCCTCGCGCTCTCCATTCCGCCGCTACCGACCCCTCTCAACGCAAGACCATCCTAAGCGACCTCCTCCTTCGCGACGTCCCTGTTTTCTTAGAGCGCTATGGTTCACAGTTAACATTCAATGAACTCCACATTTTTGATGTACTTAAAGACAATTATGAAGTGAACTGGCACTTGAAGCATCTCAGAAGCATAATCAGTCCAACATCAGATGAGCTACGATCAAGGTCCGTGACAGTGAAGAACAGAAGGCGGGCTTATCTGAATAAACTGATATTTGAGGGTCAGTATTTCTCAGAGGATGCAATGAGGGAGAGAGAGCCTTATTTGCATCATGAGTATGTTGGAAAGTTTCAGGATCCAAGTGGCAGAAGCATGGCAAGACCAGGGGAGAGATGGTCAGAGACACTAATGCGAAGAACAGAAGAAGCAATCTTGGTTGCAAAGATAAGAGGAGAGCAGCAGAAACTAGGGGTGGCTGAGAGGGATTGGATTGGTAACAATAATATAACCCGAGAGGAAGTAGAGGAGGAGGAAGAAGAAGAAGATGAAAAA 648 47.07 MEVMETSGSRALGSDAVETISARLSLIDDLYFPRALHSAATDPSQRKTILSDLLLRDVPVFLERYGSQLTFNELHIFDVLKDNYEVNWHLKHLRSIISPTSDELRSRSVTVKNRRRAYLNKLIFEGQYFSEDAMREREPYLHHEYVGKFQDPSGRSMARPGERWSETLMRRTEEAILVAKIRGEQQKLGVAERDWIGNNNITREEVEEEEEEEDEK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38498769 38499649 - Bma031390 Bma07g00989 86126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00989 216 Pfam Coiled-coil domain containing protein 97-like, C-terminal 113 215 IPR040233 -
Bma07g00989 216 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 97 5 215 IPR018613 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00989 - - - csv:101207927 319.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00988 Bma-Chr7:38482932 Bma07g00989 Bma-Chr7:38498769 4.09E-158 tandem
Bma07g00989 Bma-Chr7:38498769 Bma07g00990 Bma-Chr7:38514050 2.65E-157 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g566 . . . . . . Bma07g00989 . . Cmo16g01148 . . . . . . . Bhi11g00091 . . . . Mch10g1605 . Cla10g00204 Cam10g0210 Cec10g0215 Cco10g0216 Clacu10g0213 Cmu10g1056 Cre10g0464 . . . Cone9ag0633 Lsi07g01245 . . Cme06g02516 . . . Bda09g00675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003798 11 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00989 Bma_Chr07 FPKM 0.374917 0.12965 0.063291 0.190114 0.111397 0.159458 0.074028 0.441733 0.391739 0.300159