Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00995 ATGGTTGATGTAGCTGACAAATTAGCGTATTTTCAAGCAATAACAGGCGTAGAAGATCCTGATTTCTGCACGGAGATCCTTGCCGCTCATGGCTGGGACCTCGAGCTTGCGATCTCCCCGACGAGTTGGTTGAGGACTAGGGTGGCTGGCCCTGGTTTGGCATGGAAACTTATAACGCTTCCGATTTCTGTGGTTTCTGGTAGTTTAGGGTTACTATCTAATGCGATTGGGTTCGGCTTATGGGCTGCCGGTGGTGTACTTTCGTATTCCTTAGGGATGATTGGGTTCAGCTCTGCTTCGGGCCCTAATGCTGATTCGTCCGCTCCCTTGGTTTCCGTGTCTGCCGCAGCATCGGAAGCGATGAACTTTGTGGCAGCATTTGAAAGGGATTATGGGACGAATCGTCCAAATTTTGTGCATGAAGGGTTTATGGACGCGTTGCAAAGGTCAAGAAATGAATTTAAATTACTGTTTGTGTACCTGCACTCGCCAGATCATCCAGACACGCCATTTTTCTGTCAGAGGACTCTATGCTCGGAGATTCTAGCAGCGTTCGTGAACGAGAATTTCGTGTCATGGGGAGGAAGTATACGGGCCAGTGAAGGTTTCAAGATGAGCAATAGTTTGAAAGCTTCCCGTTTTCCATTTTGTGCTGTGGTCATGGCAGCCACGAATCAAAGAATCGCATTGCTCCAGCAGGTTGAGGGAACAAATTCTGCAGAAGAAATGCTTGCAATATTGCAGAAAGTTCTCGAAGACAGTGCCCCAGTTCTTGTTGCAGCAAGGCTTGATGCAGAAGAACGAAGGACTAACATGCGCTTAAGAGAGGAGCAAGATGCTGCTTACAGAGCAGCTCTTGAAGCTGATCAAGCAAGGGAACGGCAGAGAAGAGAGGAACAAGAACGCCAGCAAAGGGAAGCTGCTGAGTCTGAGAGGAAACAGAAGGAGGAAGAAGAAGCTCGTGCAAGAGCAGCCCTTGACGCTGCCGAGAAAGAGGCTGCCAGGGCTAGAATTCGGCAGGAGAGAGCAATGTCAATTGGCGCTGAACCTGAAAAAGGACCCAACGTCACACATGTTTTGGTACGGTTTCCAACTGGAGAACGAAAAGAAAGAAGATTTTACAGCACTTCTACTATCCGGTCTATATATGACTATGTTGATTCTTTGGGTTGTTTAGAGATTGAGGATTATAGCCTGGTATCAAACTTTCCTCGAGTTATTTATGGCCCAGAGAAGTATTTGATGTCTTTGAAAGAAGCCGGATTACACCCTCAGGCAAGCCTTTTTGTCGAGCCGAACTCGTAA 1305 47.51 MVDVADKLAYFQAITGVEDPDFCTEILAAHGWDLELAISPTSWLRTRVAGPGLAWKLITLPISVVSGSLGLLSNAIGFGLWAAGGVLSYSLGMIGFSSASGPNADSSAPLVSVSAAASEAMNFVAAFERDYGTNRPNFVHEGFMDALQRSRNEFKLLFVYLHSPDHPDTPFFCQRTLCSEILAAFVNENFVSWGGSIRASEGFKMSNSLKASRFPFCAVVMAATNQRIALLQQVEGTNSAEEMLAILQKVLEDSAPVLVAARLDAEERRTNMRLREEQDAAYRAALEADQARERQRREEQERQQREAAESERKQKEEEEARARAALDAAEKEAARARIRQERAMSIGAEPEKGPNVTHVLVRFPTGERKERRFYSTSTIRSIYDYVDSLGCLEIEDYSLVSNFPRVIYGPEKYLMSLKEAGLHPQASLFVEPNS 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38885990 38888790 + Bma026156.1 Bma07g00995 86132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00995 434 Gene3D - 353 433 - -
Bma07g00995 434 SMART 45neu3 122 248 IPR006577 -
Bma07g00995 434 ProSiteProfiles UBX domain profile. 352 430 IPR001012 GO:0005515
Bma07g00995 434 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 50 432 - -
Bma07g00995 434 SMART ubx_3 350 432 IPR001012 GO:0005515
Bma07g00995 434 CDD UAS 138 253 - -
Bma07g00995 434 Coils Coil 283 339 - -
Bma07g00995 434 Pfam UBA-like domain 6 39 - -
Bma07g00995 434 MobiDBLite consensus disorder prediction 288 327 - -
Bma07g00995 434 Gene3D - 2 42 - -
Bma07g00995 434 SUPERFAMILY Ubiquitin-like 311 432 IPR029071 -
Bma07g00995 434 CDD UBA_FAF 11 39 - -
Bma07g00995 434 CDD UBX 358 431 - -
Bma07g00995 434 Gene3D Glutaredoxin 107 257 - -
Bma07g00995 434 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 40 - -
Bma07g00995 434 SUPERFAMILY Thioredoxin-like 117 261 IPR036249 -
Bma07g00995 434 PANTHER FAS-ASSOCIATED PROTEIN 1 40 - -
Bma07g00995 434 PANTHER FAS-ASSOCIATED PROTEIN 50 432 - -
Bma07g00995 434 Pfam UBX domain 352 432 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00995 K18726 FAF2, UBXD8; FAS-associated factor 2 - zju:107430076 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00995 Bma-Chr7:38885990 Bma12g00100 Bma-Chr12:1659123 4.76E-11 dispersed
Bma03g00788 Bma-Chr3:7271956 Bma07g00995 Bma-Chr7:38885990 2.42E-67 transposed
Bma14g00121 Bma-Chr14:1548465 Bma07g00995 Bma-Chr7:38885990 2.61E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma07g00995 Bma_Chr07 FPKM 0.906397 1.414231 1.809459 1.995218 2.602936 0.865758 2.90492 1.747528 2.071482 2.04249