Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g00999 ATGGACGCAGGTGATAAAGGCCAGGCTGTGGATGTGAGGTCAGTCGTCGAAGCAGTCGCTGCCGGTGGCGATTGCGATGTTCCAATCTACGTGGTCGAAAGCCTTTGCATGCGCTGTAGAGAAAACGGGATAACAAGATTTCTTTTAACTATAATTCCACACTTCAGGAAGATATTGTTGTCGGCCTTTGAATGTACACATTGTGGTGAGAGGAATAACGAGGTTCAATTTGCTGGAGAGATTCAACCACGTGGATGCTGCTACATTTTGGAGGTCTCCGCTCGCGATTTGAAGATGCTTAATCGACAAGTAGTGAAAGCTGAGTCTGCTACAATTAGGATTCCTGATTTGGATTTTGAGATTCCTACTGAGGCTCAACGAGGAACTCTTTCTACGGTGGAAGGGATACTAGCTAGAGCAAAGGATGAATTGCAGGCTCTTCAAGAAGAGCGTAGGAGATTGGATCCTCAAACCGCTGAAGCAATTGATAAGTTTTTGTTGAAATTAAAAGCTTGTGCGATGGGAGATACATCATTCACTTTCATCTTGGATGATCCGGCTGGAAACAGCTTCATTGAGAATCCATATGCTCCATCGTCGGACCCATCATTGAGTGTTAAGTTCTATGAGCGAACTCCAGAGCAACAAGCATTATTGGGATATCTCGTTGACTCATTTGAATCAAGAGAAGGTGCTAATGGTGCATTATCAGATGAAAAAGCTGCTGTTTCAGAAATCGGAACATTGCCAACTTCATTAGTTGGAGCACCAGCTGGCCATCGAGCAATTGCTCAGAGTAATAGCGCAGAGATTGCGGAAGCTTTATTTCGTTACACTGCTCCTGAAGAAGTGATGACTTTTCCATCAACATGTGGGACTTGTGCTACCAGCTGCGAGACTCGAATGTTTGTTACAAACATACCTTACTTTCAAGAAGTGATTGTCATGGCATCCACCTGTGATTCATGTGGTTACCGTAATTCTGAGTTGAAGCCTGGTGGTCGAATTCCCGAAAAAGGAAAAATAATTACTCTCCAAGTAAAGAGCTCTAAGGATCTTAGTCGTGATGTTATAAAGTCAGATACTGCTAGTGTAAGAGTTCCGGATCTGGACTTGGAGCTGGCTAGTGGCACTCTTGGAGGAGTTGTTACAACGGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAAAGTGCATGGATTTACCTTCGGAGACAGTCTTGATGATGATAAAAAGAGCAAGTGGCAAGATTTTGGAAGGAGGTTAAACAAGGTATTGCATATTTATAATTTTCAATAA 1305 42.76 MDAGDKGQAVDVRSVVEAVAAGGDCDVPIYVVESLCMRCRENGITRFLLTIIPHFRKILLSAFECTHCGERNNEVQFAGEIQPRGCCYILEVSARDLKMLNRQVVKAESATIRIPDLDFEIPTEAQRGTLSTVEGILARAKDELQALQEERRRLDPQTAEAIDKFLLKLKACAMGDTSFTFILDDPAGNSFIENPYAPSSDPSLSVKFYERTPEQQALLGYLVDSFESREGANGALSDEKAAVSEIGTLPTSLVGAPAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGTCATSCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKIITLQVKSSKDLSRDVIKSDTASVRVPDLDLELASGTLGGVVTTVEGLITKISESLEKVHGFTFGDSLDDDKKSKWQDFGRRLNKVLHIYNFQ 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 38991888 38997903 + Bma031393 Bma07g00999 86136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g00999 434 Pfam ZPR1 zinc-finger domain 289 429 IPR004457 GO:0008270
Bma07g00999 434 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Bma07g00999 434 PANTHER ZINC FINGER PROTEIN ZPR1 1 430 IPR040141 -
Bma07g00999 434 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 216 IPR004457 GO:0008270
Bma07g00999 434 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 427 IPR004457 GO:0008270
Bma07g00999 434 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Bma07g00999 434 Gene3D ZPR1, zinc finger domain 25 79 IPR042452 -
Bma07g00999 434 Coils Coil 130 157 - -
Bma07g00999 434 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 1 430 - -
Bma07g00999 434 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Bma07g00999 434 Gene3D ZPR1, A/B domain 335 432 IPR042451 -
Bma07g00999 434 SMART zpr1 289 432 IPR004457 GO:0008270
Bma07g00999 434 SMART zpr1 34 194 IPR004457 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01229 Bma-Chr4:35692039 Bma07g00999 Bma-Chr7:38991888 1.14E-21 dispersed
Bma07g00993 Bma-Chr7:38837991 Bma07g00999 Bma-Chr7:38991888 2.28E-19 proximal
Bma07g00999 Bma-Chr7:38991888 Bma07g01002 Bma-Chr7:39708054 2.49E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g00999 K06874 - csv:101208000 647.506